Gene HMPREF0424_1141 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1141 
Symbol 
ID8709951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1318723 
End bp1319364 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content38% 
IMG OID646483232 
ProductABC transporter, ATP-binding protein 
Protein accessionYP_003374340 
Protein GI283783586 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGATT TATTGCAATT AAAAAATGTG AAGTACACTT ACGGACCTGC AAATATTGCG 
GTACTAAATG ACGTGAATGC TGAGTTTGAA GCTGGCACCA TGTACAGTAT CATGGGAGCT 
TCTGGAGCCG GAAAGTCTAC TATGCTCTCA CTTTTAGCTG GATTAGATAC TCCGTATAGT 
GGCGAAGTGC TTTTTAACGG TGAAAATATT GCAAAAACAG GATATGTTGA GCATCGCAAA 
AAACATATTT CACTTGTTTT CCAGAATTTT AATCTTATTG ACTATTTGAC GCCATTAGAA 
AATTTGCGAT TAGTAAATTC ACATGCTGAT GTTCAAGTGC TAATAGATCT TGGATTAACT 
GAAGAAGAAG CAAATCGTAA CGTCACTAAA CTTTCTGGTG GTCAACAGCA GCGTGTTGCA 
ATTGGACGAG CTTTAGTATC TTCTGCTCCG GTAATTTTAG CTGATGAGCC TACTGGAAGT 
CTTGACCCTG CTACTACTAA AGAAGTTATT GCAATATTAA AAAATGCTGC TAAAGAGCAT 
GGCAAATGTG TGATTGTTGT TACTCATGAT TCGAAGGTTG CCTCTCAAGC TGATGTAAAA 
TACGTGCTGA AAAATAAACA GCTAACGCGA CAATCTGCTT GA
 
Protein sequence
MSDLLQLKNV KYTYGPANIA VLNDVNAEFE AGTMYSIMGA SGAGKSTMLS LLAGLDTPYS 
GEVLFNGENI AKTGYVEHRK KHISLVFQNF NLIDYLTPLE NLRLVNSHAD VQVLIDLGLT 
EEEANRNVTK LSGGQQQRVA IGRALVSSAP VILADEPTGS LDPATTKEVI AILKNAAKEH 
GKCVIVVTHD SKVASQADVK YVLKNKQLTR QSA