Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1042 |
Symbol | |
ID | 8710058 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1183640 |
End bp | 1184836 |
Gene Length | 1197 bp |
Protein Length | 398 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 646483135 |
Product | citrate transporter |
Protein accession | YP_003374246 |
Protein GI | 283783492 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1055] Na+/H+ antiporter NhaD and related arsenite permeases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAAGC GCTGGCTGTT GAATCTGGTC AAGTGTGAAA CCATTCTTAT TGTTGCCGCA ATTTTAGCGG TTATTTCTTG TTTTTTTGTA CCTCTAGATC CGCAATATTT GAGTTATATT CATGTCAACA CTATTTCGCA ATTAGTGTGT CTTATGATGG TTGTGTGCGG ATTCCAGCGC ATTGGTGTGT TTCGATCTAT TGGTGCGCGT TTGCTAAGGC ATGTGCGCAC TGAGCGCGGC TTGGTGCTCG TGCTTATGTC GTTAACATTC TTTTCAGCAA TGTGGATTAC GAACGACGTT GCTTTGGTTA CTTTTGTGCC TTTTGCGCTA TCTGTGCTCG TAATGGCGAA TGCTGAAAAG CAGTCAATTC TTGTAATTAC GCTTATGACC ATTGGTGCCA ATGTTGGAAG TATGCTCACT CCTATTGGCA ATGCTCACAA TCTGTATTTA AAGGCGTTGA CTCATATGTC TACGCAAGAT TTTTTGAAGA TTATGGCTCC TTATACGATT ACAGCAGCAC TGTTGATGAT CGTATTTGCA TTCGTATTCT TTAAGTCGCG CACAGTTGAC CAGTTTGCAG GTTTGCATGG TGACGATATT GAACAAAGCG TGTTGGCTCC TTCGCATGGT CATCCGCAGC CTGATGAAAT TCGTGTTATG GGTTACGGCA TGAATTTTAC TCGCTGGCGT GTTGCTGTTT ATAGTTTGCT GTTTGTCGTT TGCTTGTGTG GTGTTAGTGG ATGGATTCCT GACTGGATTA TGGTGCTTAT TATGGTTGCA GCTTTTCTTG TTTGCGACCG CCACGTATTC CGTGTTTTAG ATTGGGCTTT GCCACTCACG TTTATTATGT TCTTTGTTTT TATTGGCAAT ATGCGCCGAG TTTCTGGATT TAGCGATCTT GCGCAAATGT GGGTTGGTGC GCATCCGATG GAAGTTTCTA TTGCTTCAAG CCAATTTATT AGTAATGTAC CAACGACAAT TCTGCTTTCT GGATTCTGTG ATCAGTGGAA GCTTCTTATT ATTGGCACGA ATCTTGGTGG AATGGGTACT TTGATTGCTT CTATGGCTTC GCTTATTTCT TATAAGGGAA TTACGCACCA GTATTCGCAT TACCGTGGGC GTTATTTGCT CACGTATACT ATTGTCAATG TGTTCTTTCT TGCAGTGTTG ATGTCACTTG CGTGGATTAT TGAATAA
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Protein sequence | MMKRWLLNLV KCETILIVAA ILAVISCFFV PLDPQYLSYI HVNTISQLVC LMMVVCGFQR IGVFRSIGAR LLRHVRTERG LVLVLMSLTF FSAMWITNDV ALVTFVPFAL SVLVMANAEK QSILVITLMT IGANVGSMLT PIGNAHNLYL KALTHMSTQD FLKIMAPYTI TAALLMIVFA FVFFKSRTVD QFAGLHGDDI EQSVLAPSHG HPQPDEIRVM GYGMNFTRWR VAVYSLLFVV CLCGVSGWIP DWIMVLIMVA AFLVCDRHVF RVLDWALPLT FIMFFVFIGN MRRVSGFSDL AQMWVGAHPM EVSIASSQFI SNVPTTILLS GFCDQWKLLI IGTNLGGMGT LIASMASLIS YKGITHQYSH YRGRYLLTYT IVNVFFLAVL MSLAWIIE
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