Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1036 |
Symbol | |
ID | 8710002 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 1177159 |
End bp | 1178538 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 646483129 |
Product | hypothetical protein |
Protein accession | YP_003374241 |
Protein GI | 283783487 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG2382] Enterochelin esterase and related enzymes |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTGCAAT TGGCAAAAGT GAGTCTTTTG CAAGGATGGC TACCAGTAAG CCTTTTTAGC GTAAATGGTA TTTCTTTAGT CTTGTTGCTT TTTATGAAAA CAAAACGCGG CAAGAAAATG TTCCACTTAC TAATACAACT TGCAATAGGT GTCATAACAT TTTTTGTCGG TGGAATAATT GCTTGGCTTA TTTCTGACGT GTTTCTTGTA TTCGAAGTAA GTCTTGGATG GCTCGTTATT TTTTCTATTG CATGCGGCTT CGGGCTTATA GGTTTTGCAG CAACAGCATT TGTTTTCTTA CACAAATGGA GAAAACTAGT TGCAGTAATA GCTATTATCT TGACGTTAGC AAGCACAGCT CTTCATGTAG ACATGATTTA TGGGGAATAC ACGACAATAG GTTCAATATT TGGAATGGGC GGTTTTCCAA AACTAGAAGT TAATAAGCAA AAATCCGCAT CCTCTAGTAT TAAACAATGG AGAGAGTTAG CAGCACAACA AAAACTGCCA AAACTGCCTA AAAAAGGTAT TGTTCGTTCA GTTTATATCC CTAACACTGC TTCACATTTC AATGCCAGAA TAGCAAACGT ATACTTGCCA CCTGCTGCAC TTGTTAAAAA ACCACCAAAA CTGCCAGTTA TGGTCATGTT TGCAGGACAA CCTGGTAGCC CTAATCACTT TTTTGCAGCA AGCGATATTG CAAATACTTT AGACAATTAC GCGAAAAATC ACTACGGTCT TGCACCTATT GTTGTAGCCC CTGACCAAAA TGGTGAATCT TCGCATAATT CTCTGTGTGC GGATACACAT GTGTTCGGCA AAGCAGAAAC ATATTTAATT AATGATGTTC CTAAATGGAT ACGCAAACAT TTGCCAGTAA GCAAAGATCC TAAAATGTGG CTTATGGGCG GCTTCTCACA AGGAGGCACT TGCTCAACGC AACTAGTTCC ATCTCACCCT GATATATTTG GAAACATTTT TTCTGCCGGA GGGGAACTAG AACCAACATA TAAGAATCGC CAAGAAACAA TTAATCATTA TTTCAATGGA AACACATCAG AATATGAGCG ACATATACCT AGCGTGATAA TGCGTAAAAA TGCTCCTTTG AAACAAAATT ATTACGCTAT TGCGGGCTCA TGGGATACTA AATCTCAAGC GAATCAGGCA ACCATCGCAC TAAGCGCACA TCGCGCTGGA ATGAATGTTA TAACCATGCT TTCTCAAGGC AATGGTCATG ATTGGCACAC AGTAAAAGCT GGATTAAAAA TAGCAATTGA TCAATTCTGC AAAAAAACAG GTATTTCAAG CACTGCACCA AAACTTAATA CCTACCAAAA TGTACAAATT CTTATCAACC AGCAAGTGAA TCGAGACTAA
|
Protein sequence | MLQLAKVSLL QGWLPVSLFS VNGISLVLLL FMKTKRGKKM FHLLIQLAIG VITFFVGGII AWLISDVFLV FEVSLGWLVI FSIACGFGLI GFAATAFVFL HKWRKLVAVI AIILTLASTA LHVDMIYGEY TTIGSIFGMG GFPKLEVNKQ KSASSSIKQW RELAAQQKLP KLPKKGIVRS VYIPNTASHF NARIANVYLP PAALVKKPPK LPVMVMFAGQ PGSPNHFFAA SDIANTLDNY AKNHYGLAPI VVAPDQNGES SHNSLCADTH VFGKAETYLI NDVPKWIRKH LPVSKDPKMW LMGGFSQGGT CSTQLVPSHP DIFGNIFSAG GELEPTYKNR QETINHYFNG NTSEYERHIP SVIMRKNAPL KQNYYAIAGS WDTKSQANQA TIALSAHRAG MNVITMLSQG NGHDWHTVKA GLKIAIDQFC KKTGISSTAP KLNTYQNVQI LINQQVNRD
|
| |