Gene HMPREF0424_0861 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0861 
Symbolera 
ID8709490 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp974005 
End bp975066 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content44% 
IMG OID646482961 
ProductGTP-binding protein Era 
Protein accessionYP_003374078 
Protein GI283783324 
COG category[R] General function prediction only 
COG ID[COG1159] GTPase 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00436] GTP-binding protein Era 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAATAATA TTAACAACTT TGACGATACT GATGACTTCG ATGACACTGA TGACTTTGAC 
GACGAGATGT TTGCAAATCT AGACGCTTCA ACTTGCGCAA CGATTTCTAC TCCTGATTTT 
CACGGTTATC GTTCCGGTTT CGTAGCTGTA GTTGGTAGAC CAAACGTTGG TAAGTCTACG 
CTTATGAATG CTCTTATTGG TACGCAAATT GCTATTGCGT CTTCTCGTCC GGAAACTACG 
CGTAAGGCTA TTCGAGGGAT TGTTACTACC GATAATGCAC AAATGGTGTT GGTTGATACT 
CCTGGTATTC ACCGTCCTCG TACGCTTCTT GGTCAGCGTT TGAACGATAT TGTTGACGAG 
TCGCTTGCAG ATGTTGACGC GATTGCATTT TTGCTCCCAG CAGACCAGGA AATAGGACCA 
GGAGATAGGC GAATTTTAAG CCGTCTTCGC TCTGATTTTG CTAAAAAAGA TGAGAAGGGC 
AATTGGACTT GGAAAGTTCC GCTTATCGGT ATTGTTACGA AAATCGATAC GCTTAGTCGC 
AGTGAGTTAG TTACGCATTT GCTTCAAATT CAGCAGTTTG CTGATTTTAC GGATATTGTG 
CCTGTGAGTG CGTTGGAACG TGACAATGTT GACGAAGTTA AGAATGTTTT GATTCAAAAC 
TTGCCGGAAG GTCCGCAAAT GTATCCGGCG GATCAGCTTA GTGAGGAAAG CACAGAAAGC 
ATGATTTCGG AGCTTATTCG CGGCGCATTT TTGGAAGAGT TGGACGACGA GTTGCCTCAT 
TCTTTAGCTG TTGTAGTTGA CGATATTGTG TATCCGGGGG ATGGCGAAGA TACTCAATAC 
GAAGACAACA AAGCGCATGT GCTTGTATCT GTTTATGTTG AGCGTGATTC TCAAAAGCCG 
ATTATTATTG GTCATCGTGC GGAGCATTTA GTGCGCGTAA AGAAGCGTTT GCGCACGGCG 
GTAAATCGTA TTACTGGAAC AAAAGCTGTG CTTGAATTGC ACGTGAAAGT TGCAAAAGGA 
TGGCAGAGCG ACCCTAAGAA GCTTGAGCGT TTAGGGTTCT AG
 
Protein sequence
MNNINNFDDT DDFDDTDDFD DEMFANLDAS TCATISTPDF HGYRSGFVAV VGRPNVGKST 
LMNALIGTQI AIASSRPETT RKAIRGIVTT DNAQMVLVDT PGIHRPRTLL GQRLNDIVDE 
SLADVDAIAF LLPADQEIGP GDRRILSRLR SDFAKKDEKG NWTWKVPLIG IVTKIDTLSR 
SELVTHLLQI QQFADFTDIV PVSALERDNV DEVKNVLIQN LPEGPQMYPA DQLSEESTES 
MISELIRGAF LEELDDELPH SLAVVVDDIV YPGDGEDTQY EDNKAHVLVS VYVERDSQKP 
IIIGHRAEHL VRVKKRLRTA VNRITGTKAV LELHVKVAKG WQSDPKKLER LGF