| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0849 |
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| Symbol | |
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| ID | 8709603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 960731 |
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| End bp | 961663 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482949 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_003374066 |
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| Protein GI | 283783312 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTTGC TACAACTGAA GTATATTGTA AAAATCGTTG ACTGCGGTTC AATGAATGAA
GCAGCACGAG CACTATATAT TTCACAACCA GCATTGAGCT CTTCTGTAAA AGAGCTTGAA
AGAGAACTTA ACATTGAAAT TTTCACTAGA TCCACTCAAG GAATTGCATT AACAGCTGAT
GGAGCTGAGT TTTTGACGTA CGCTCGACAA GTAATTGAGC AGGCGGATCT TCTTGAAGAA
CGATACAAAA GTACGAAGCC TCGCCCACAA TTATGCAGCG TTGCAACACA ACACTACATG
TTTGCTGTTG AAGCATTCGT CGATATGATT CGCAGTATTC ATTCTAACGA ATACGAGTTT
TCAATTCGCG AGACGCGCAC AAAAAATATC ATTAAGCAAG TAAGCGATAT GCGCGCAGAC
CTTGGAATTC TTTATCTTTC TGACTACAAC AAGGATGTAA TCGGCAAGCT GCTTCGTGAA
AAACATTTGG AATTCCACCC GCTTTTCCGA GCAAAATTGC ATGTTTTTCT TTCTAGAAAT
AATCCGCTTG CAGTGCGAAA AAGCTTGAGC TTGGAAGATT TGAAACCGTA TCCGTTTATT
CAATACGAAC AGGGAGAAGA AGGAAGTTTC TTCTTCGCAG AAGAAGCGGT TTGGCCTACT
CGCCCACCGA AAAAGATCAA CGTTTCTGAC CGCGCTACCA TTTTAAACTT TATTATTGGG
TTGAATGGTT ACACTGTTTG CACTGGAATA GATAACGGCG ATTTAAACAA TGAAAAAATT
GTCACTATTC CGCTTGAATG TGATGACACT ATGCTTGTTG GCTGGATTAC CAACGAGCGC
ACGAAGCTTT CAAGAGCTTC ACTCGCTTAT CTTACGCAAC TTAAATCTGT GCTTGTAAGA
CATGGTTACG CGCTTATAGA TTCACGAAAT TAG
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| Protein sequence | MTLLQLKYIV KIVDCGSMNE AARALYISQP ALSSSVKELE RELNIEIFTR STQGIALTAD
GAEFLTYARQ VIEQADLLEE RYKSTKPRPQ LCSVATQHYM FAVEAFVDMI RSIHSNEYEF
SIRETRTKNI IKQVSDMRAD LGILYLSDYN KDVIGKLLRE KHLEFHPLFR AKLHVFLSRN
NPLAVRKSLS LEDLKPYPFI QYEQGEEGSF FFAEEAVWPT RPPKKINVSD RATILNFIIG
LNGYTVCTGI DNGDLNNEKI VTIPLECDDT MLVGWITNER TKLSRASLAY LTQLKSVLVR
HGYALIDSRN
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