| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0721 |
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| Symbol | |
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| ID | 8709489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 816767 |
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| End bp | 818713 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646482826 |
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| Product | sensor histidine kinase/response regulator |
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| Protein accession | YP_003373948 |
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| Protein GI | 283783194 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.213488 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATCTA GTAATAATAA CTACAATAAC GCTGAATCAA CTATTAGCAA CAGCACAAAT
AATAACTCTA AAGATGATTC AGATGTTAGA ACTGCTGGAA AAAGTGTTGC GATAGAGCTA
AGTGAAAATA ACAAAAAAAA CAAAAAGCCT CGTAAAACCT GCTGGCTACG TCGTCGCATA
AATGCAATAC CACTGAGTAC GCGTTTAGTT GCATGTACTC TTGCTATTTT AACTGTAGCC
GCTTTTTGCA TATCACTATC AATTCAGCAG CTCGTAGGAA ATTATTTGCT AGAAAAAACT
GATGTACAAT TAGCAAGTCA AGCGCAATTT GTTTATGACA ATGTTGATTC ATTGCGCATG
AAAAACTCAA ATCAATCTTC AGTAGGTCCA AATAATTACT TTATGCAAGT TAGAGATACG
CATAATAAAA TTATTTCTAC TCCATTAATA CCAATTAAAG GATCGGTTGT TTCGGTTCCT
AAACTTCCTG CAGACGGTTT TGATAGTAAA AAAATTGTTA CCCACAAGCC TTACACAGCA
CCTGCAATCG TCAAGGGGAA TACTAATAAA GTCGATGCAA TCACTAAAAA GGCTGCAACA
GCTCCATGGA GAGTTTTAGT ATTAACGTGG GGTCAAAAAA ATAGCTATAA TTCAGAGTTA
AGTGTTAGCG GTTATGTCTA TATTGCTTTA TCTCTTAGCG ATCAAATTGA TACCGTTAGC
ACACTTACTC GTTACTGTAT AATGGTGAGT ATTGCAGTTA TTTTGTTTGG AGCAGTATTT
TCAGCAATTA TTATTCAATC AGCTTTAAGA CCGTTAAAAC GAATTGAAAA AACAGCTTCA
AAAATTGCTT CTGGAGATTT AAGCAAACGA GTTCCATCTG CTCCTGAAAA TACTGAGGTT
GGATCTTTAG CAGCTTCTCT TAATTCTATG CTTGCTCGTA TTGAAAGAGG ATTTAATGAG
CAAGAAGATA TGACAGAAAA AATGAAGCGA TTCGTTTCAG ATGCAAGTCA TGAATTACGT
ACTCCATTAG CTGCAATTCA TGGATATGCT GAGTTATATA CAATGTGGCG CAACATGCCA
GGAGAGCAGG AGAGAGCAGA TGACTCTATT GCCCACATTA AGGCTTCTAG CGAGAGAATG
ACTGAACTAG TAGAAGATTT GCTTTCTTTG GCGCGTTTTG ATGAGGGTCG TGGAATTAAT
ATTTCACAGC AAGTTAGCTT ATCTCCAATA CTTTCTGACG CGGCTAATGA TCTACATGCT
CTTGATCCTG CTAGATCCGT TCAACAAGGC TATTTAACTA TTTCGGATGA GTGGAAGCTT
ATGAGTTGCA CAAATTGCGA TTTTGAGCGT AAGCTCCAAT TCCATGTTGG TACACTTCCA
ACTGTTACGC TACTCGGTGA TGGTGCTAGA TTACGCCAAG TAATGACAAA TATCGTAGGA
AATATTCATA GATACACCCC TGTTGATTCT CCTGTAGAAA TTGCAGTAGG AGTTATGAAG
GCGTCTATAA CTCCAAATGA ATTATCTAAA TTACCTTCTG TAAAAGAATC ACTGAAGGAG
TTTTTGGAAG CAGCGGAAGT CAGCCAATCT ACTGATACGG GTCATAAGTA TGCTGTAATT
CGAGTTGTTG ACCATGGCCC TGGAGTTCCA GAAGAATCAT TGTCTAGAAT TTTCGAGCGT
TTCTATATTG CTGACCCATC AAGAGCTAGA GAAAAAGGTG GAACTGGCTT GGGTATGGCA
ATTGCGCAAT CTGTAGTAAA AGCACATCAT GGTTTTATTT GCGCAACTAT ATCTTCTCCA
CTAGAAGCAT CGACCAATTC TAAAACTAAT CTTGATGACA CTATGGATGG GTCTGAGCAA
ATAGATGTTA AAGCTCATGG CCTAACTCTT ACTGTAGTTC TGCCAGTTAA TGAAATCGAT
GAGCCTTCTA AAATTGTTAG CGATTAA
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| Protein sequence | MQSSNNNYNN AESTISNSTN NNSKDDSDVR TAGKSVAIEL SENNKKNKKP RKTCWLRRRI
NAIPLSTRLV ACTLAILTVA AFCISLSIQQ LVGNYLLEKT DVQLASQAQF VYDNVDSLRM
KNSNQSSVGP NNYFMQVRDT HNKIISTPLI PIKGSVVSVP KLPADGFDSK KIVTHKPYTA
PAIVKGNTNK VDAITKKAAT APWRVLVLTW GQKNSYNSEL SVSGYVYIAL SLSDQIDTVS
TLTRYCIMVS IAVILFGAVF SAIIIQSALR PLKRIEKTAS KIASGDLSKR VPSAPENTEV
GSLAASLNSM LARIERGFNE QEDMTEKMKR FVSDASHELR TPLAAIHGYA ELYTMWRNMP
GEQERADDSI AHIKASSERM TELVEDLLSL ARFDEGRGIN ISQQVSLSPI LSDAANDLHA
LDPARSVQQG YLTISDEWKL MSCTNCDFER KLQFHVGTLP TVTLLGDGAR LRQVMTNIVG
NIHRYTPVDS PVEIAVGVMK ASITPNELSK LPSVKESLKE FLEAAEVSQS TDTGHKYAVI
RVVDHGPGVP EESLSRIFER FYIADPSRAR EKGGTGLGMA IAQSVVKAHH GFICATISSP
LEASTNSKTN LDDTMDGSEQ IDVKAHGLTL TVVLPVNEID EPSKIVSD
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