| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0699 |
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| Symbol | |
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| ID | 8709652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 790460 |
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| End bp | 793123 |
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| Gene Length | 2664 bp |
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| Protein Length | 887 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482804 |
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| Product | DNA gyrase/topoisomerase IV, A subunit |
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| Protein accession | YP_003373926 |
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| Protein GI | 283783172 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTCAC GCCATCACTC AACACAGCAA GCTTTCGACC CAAGAAAAGT TAAAGAGCAT
ATTGTTGAAA CACCATTAAA CGAAGAAATG AGCAAATCCT TCTTGGAATA TGCTTATTCA
GTTATTTATG CTCGAGCTTT ACCGGACGCA CGAGACGGAA TGAAACCAGT GCAGCGACGC
ATTGTGTATC AAATGGGCAA TATGAATTTG AGTCCTGATC ATGCTTATAT GAAATCAGCG
CGTGTTGTTG GTGAAGTAAT GGGTAAACTT CATCCTCACG GTGATTCTGC AATCTATGAG
GCAATGGTTC GTCTAGCTCA ACCATTTTCC CTACGCTTGC CACTTGTTGA CGGACACGGT
AATTTTGGCT CTCTTGACGA CGGTCCAGCA GCTTCTCGAT ACACCGAAGC GCGTTTAGCT
CCTGCATCAC TAGGTATGAA CGCGGATATC AACGAAGACA CAGTTGATTT TGTACCAAAT
TACGACAATA AACTAAAAGA ACCTACTGTG CTTCCTGCAG CTATTCCAAA TCTTTTAGTA
AATGGCGCTT CTGGAATTGC TGTAGGCATG GCAACAAATA TGGCAACGCA TAATCTAGGC
GAAGTAGTTG CTGCAGCAAA ATATGTTATG AAACATCCTG ATGCAACCCT AGATGATCTT
ATGAAACTAG TTCCAGGACC TGACTGGCCT AGCGGAGGAA TTATCATTGG TCGAAGTGGC
ATTCGCGAAG CTTACGCAAC AGGTCGCGGA GCATTCACTA CAAGATCTAC AACACATATC
GAAAATATTA CTGCTCGCAA AAAAGCTATT ATTGTTACAG AACTTCCGTT TATGGTTGGC
CCAGAGCGCG TTTTGGAAAG AATTTCTCAA GGAGTTAAAT CAAGAAAATT AGACGGTATT
TCAGGTGCTA TTGATTTAAC AGATCGACAT AACGGAACTC GTATTGTTAT TGAGATTAAG
ACAGGTTTTG ATCCTAACGC TGTGCTTGCT CAACTTTTTA AGCACACTCC TTTGCAAGAG
AGCTTTACTA TTAACAATGT TGCACTTGTT GACGGTAGAC CTCACACAAT GGGCTTGCGA
GAGCTATTAG ACGTTTGGAT TTCTCACCGC AGAACCGTGG TACGCAGACG CAGCGAATTT
AGGCGCAAAA AAGCTCAAGA ACGCTTACAT TTGGTTGATG GCTTGCTTCT TGCACTTCTT
GATATTGATG AAGTAATTCA GGTCATTCGT TCATCTGAAG ATGCAGATAG TGCAAAAACT
AAGTTAATTA AAGTATTCGA TCTTGATGAA ATTCAAGCAC AGTATATTCT TGACTTACGT
CTTCGCAGAC TTACTAAAAT GAGCCGAATA GAGCTCGAAG CTGAACGCGA CGATTTGCTC
AAAAAAATTG AAGAGCTAAA TCAAATATTA AGTTCTGAAG CTAAACTCGA CAACGTCGTA
ATAGCAGATA TGGATTCTGC AGTTAAACAA TGGGATACTC CACGCAGAAC AATTTTGCTT
GACGAAAATG AAGATGGTAG TTTTACTCCA GTAGCCTCCA GCATAAATAA AAACAGTGAG
GATATTGCGA TTAAAGCTGT GCAATCAGCA AATAAAATTA CTTCAACTCA AGCAGATTTG
GCTGCAGCAG CTAATGCAGC TCGTAAAACT GGAGAAGCTG ACGCATCTTC TGTTGCAATG
CAATTAAGTG ACGAACCTTG CGCAGTAGCA TTAAGCACTT CAGGGTTAAT TGCCAGAACA
AGCATTGCAG TGTTAGAACA TTGGAATTCG CACAACAACA ACGTATTTAA CACTCCTTGT
AAAACAATGT TTGCAACAAC AACGCGTTCA ACTTGTGCTC TTGTTACTTC ATCTGGTCGA
CTAGTTCTAG CTCATGTTGC AGATTTGCCA CAACTTAACT ATGAAGAAGG AAAACCTGCG
CTGCTCAACC ACGGAGTAAA AGCACAAGAA CTGCTAACTT CCACGCAAAG CACGGATCCA
GTAAGAGGAG AACGCGTAGT TTCAGCAATA GCATTTGATG CCTCACAAAA CGCTACTCCA
CTTGCAATTG GAACACGAAA CGGTGTAGTT AAAAGATGGA ATTTTGAAGC TCCAACTACC
ATGGATTCAT GGAGCATAAT TGACTTAAAA GACGACGACA CCGTTATTGC CGCAGCTCCA
GCAAAAGACA ACGACAGACT CGTGTTCATT AGTAGTGATT CTTCATTACT TACCTTTGAC
GCTAAACAAG TTAGACCTCA AGGGCGCACA GCAGGCGGAA TGGCAGGCAT TCGTTTAGCA
GAAGGTACTA AAGTTGCAAC CTTCGCAGTA GTGCCAGAAA AATCAATAGA GTGGCATTAC
GAAGAAGGTG AAAATGGTTT ATTCTCCGCT TCTGGAACAG TTGTATTCAC CGTTGCTGGA
GACAGTGAAG CTCTTCCTGG AACCGAAAAC GGTTCTGCAA AGATTACTCC ATTTGACATG
TACCCAACAA AAGGTCGCGC AACTGGTGGC GTGCGCTCGC AAAGATTCCT TAAAGGTCAA
GATACGTTGA TACACGCGTA CGTTGGATAC TATCCATTGC AAGCCGTTAC AGAAGGCGGA
AGCAATGTTG AGTTACCTAA GCCAGATATG CGTAGGGATG CTTCTGGAAC TGAACTCGTT
TCCCTAATTG CGCACATTGG GTAG
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| Protein sequence | MPSRHHSTQQ AFDPRKVKEH IVETPLNEEM SKSFLEYAYS VIYARALPDA RDGMKPVQRR
IVYQMGNMNL SPDHAYMKSA RVVGEVMGKL HPHGDSAIYE AMVRLAQPFS LRLPLVDGHG
NFGSLDDGPA ASRYTEARLA PASLGMNADI NEDTVDFVPN YDNKLKEPTV LPAAIPNLLV
NGASGIAVGM ATNMATHNLG EVVAAAKYVM KHPDATLDDL MKLVPGPDWP SGGIIIGRSG
IREAYATGRG AFTTRSTTHI ENITARKKAI IVTELPFMVG PERVLERISQ GVKSRKLDGI
SGAIDLTDRH NGTRIVIEIK TGFDPNAVLA QLFKHTPLQE SFTINNVALV DGRPHTMGLR
ELLDVWISHR RTVVRRRSEF RRKKAQERLH LVDGLLLALL DIDEVIQVIR SSEDADSAKT
KLIKVFDLDE IQAQYILDLR LRRLTKMSRI ELEAERDDLL KKIEELNQIL SSEAKLDNVV
IADMDSAVKQ WDTPRRTILL DENEDGSFTP VASSINKNSE DIAIKAVQSA NKITSTQADL
AAAANAARKT GEADASSVAM QLSDEPCAVA LSTSGLIART SIAVLEHWNS HNNNVFNTPC
KTMFATTTRS TCALVTSSGR LVLAHVADLP QLNYEEGKPA LLNHGVKAQE LLTSTQSTDP
VRGERVVSAI AFDASQNATP LAIGTRNGVV KRWNFEAPTT MDSWSIIDLK DDDTVIAAAP
AKDNDRLVFI SSDSSLLTFD AKQVRPQGRT AGGMAGIRLA EGTKVATFAV VPEKSIEWHY
EEGENGLFSA SGTVVFTVAG DSEALPGTEN GSAKITPFDM YPTKGRATGG VRSQRFLKGQ
DTLIHAYVGY YPLQAVTEGG SNVELPKPDM RRDASGTELV SLIAHIG
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