| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0679 |
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| Symbol | rrmJ |
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| ID | 8709856 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 766711 |
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| End bp | 767514 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 646482784 |
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| Product | ribosomal RNA large subunit methyltransferase J |
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| Protein accession | YP_003373907 |
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| Protein GI | 283783153 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1189] Predicted rRNA methylase |
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| TIGRFAM ID | [TIGR00478] hemolysin TlyA family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTTTGA ATGAGGATTT AAGTAAACTT TCAAATAGCA ATATTTCACA ACGCTTAGAT
TGCGCTTTGG TTAATCGTGG TTTAGCAGAA AGTAGGACAA CTGCTCAACG TTTAATTCGT
GCTGGCGTAG TGAGTGTTGA CAATCGAAAT ATTACGAAAT CCTCATTTTT AGTAAACAAT
TCACATACAA TAACAATCGA CGAATCAAAA AATACGCAAT CTTGTATTAG ATACGTTTCT
CGTGGAGCAC TTAAGTTAGA AGGTGCTTTC GAAGCGTTTT CTAAAAATGG TTTAACTACT
TCCAAATCAA CTAAAGCTCT AGATATAGGT GCATCAACGG GTGGTTTTTG CGACGTTCTT
TTGCAAAGAG GTGTTCATTC TGTAATAGCT TTAGATGTTG GTCATGGTCA ATTGCATCCA
AAAATAGCTA ACAATTCACA TGTAATTGAA ATGAGTGGCG TAAATATTCG AGATGTGTAC
GAAGAGAACT TGCCATATAA GCCAAATCTT ATAGTTTCGG ATGTTTCTTT TATTTCTCTA
ACGTTTGTTA TTCCAGTAAT TTCTAGAATA GCTCAATTGC ATGCAGATAT TGTGCTTTTA
GTTAAGCCGC AATTTGAAGT AGGAAAAGGA AACCTTGGAA AAGGTGGAAT AGTAACTGAC
GAGACTTTAA GAATTAAAGC TTTAGAAACA ATAAAAAGTT GTGCAAATCA AAACGGTCTA
AAGGTTATCT CCTCTTGCGA ATCTCCTATT GAAGGAACGC ATGGCAATAC GGAGTATCTT
CTTTATGCGC GTTACGAGAA GTAA
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| Protein sequence | MTLNEDLSKL SNSNISQRLD CALVNRGLAE SRTTAQRLIR AGVVSVDNRN ITKSSFLVNN
SHTITIDESK NTQSCIRYVS RGALKLEGAF EAFSKNGLTT SKSTKALDIG ASTGGFCDVL
LQRGVHSVIA LDVGHGQLHP KIANNSHVIE MSGVNIRDVY EENLPYKPNL IVSDVSFISL
TFVIPVISRI AQLHADIVLL VKPQFEVGKG NLGKGGIVTD ETLRIKALET IKSCANQNGL
KVISSCESPI EGTHGNTEYL LYARYEK
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