Gene HMPREF0424_0556 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0556 
Symbol 
ID8709485 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp600350 
End bp600940 
Gene Length591 bp 
Protein Length196 aa 
Translation table11 
GC content35% 
IMG OID646482666 
Producthypothetical protein 
Protein accessionYP_003373793 
Protein GI283783039 
COG category[K] Transcription 
COG ID[COG5340] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones4 
Fosmid unclonability p-value0.00000356919 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTAAAAG ATCAATTGCG CAATTACATA GAGAAAAAGC AAGTTTTAAG CATTGATAGT 
GTCATCAAAG AACTTGGAAT TAGCCCGTCT AGTGTTTATC GATTTATTAA AGATGAGAGC 
TTAGAGCGTG TATCAAAAGG CGTTTATGTT AACAGCAGTT TGTGGAATGA TGAAATGAAT 
TTATTGTCAA AGCGCACATC TGTTGCTGTT TTTTCACATG AGTCCGCACT TCTTTTACAT 
AATTTGACTG ATAGAGAGCC TTCTTCTTTA ACAGTGACTG TTCCGTCAAC TTATAATGCA 
AGTAGTCTAA TTAAGACTGG TGTTAGAGTG TTTTATATAA GACCAGATTT TTTAGGAATT 
GGTAAGACGA ATCTTATGTC GCTTGAAGGT AATCTTGTGC CTTCTTATGA TTTAGAGCGC 
ACAATTTGCG ATATTTTGCG TTCTCGTTCT CAAATAGATG CACAGGTGGT ATTTGGTGCG 
TTAAAAGCTT ATGTTAAAAG AAAGGATAAG CGACTTGATA TACTAAGCGA TTACGCTAAA 
AAATTTAGGA TTTCAAAGTT GATTTCACAA TATTTGGGGG TGTTGTTATG A
 
Protein sequence
MLKDQLRNYI EKKQVLSIDS VIKELGISPS SVYRFIKDES LERVSKGVYV NSSLWNDEMN 
LLSKRTSVAV FSHESALLLH NLTDREPSSL TVTVPSTYNA SSLIKTGVRV FYIRPDFLGI 
GKTNLMSLEG NLVPSYDLER TICDILRSRS QIDAQVVFGA LKAYVKRKDK RLDILSDYAK 
KFRISKLISQ YLGVLL