| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0552 |
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| Symbol | |
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| ID | 8708968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 596307 |
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| End bp | 598073 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482662 |
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| Product | ABC transporter, ATP-binding protein |
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| Protein accession | YP_003373789 |
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| Protein GI | 283783035 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00000126297 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACAAAA CTGACAATAC AGCAAATCAG CAATCGCTCG CGAATCAGCA ATCATCCAAA
CTACATCCCG ACGTAAAAAA TTACGTAAAA CTATTTTTCA AGGAAAACAA GCTTGTAGCT
TTTCTTTCGA TGATAGTTTT TATTTCCTTG TCTATGATTT ACACTGCTAT TTCTTGGATT
TTGCAAATTA TTTTCGACTA TATGGCAGGT AAAGGAGCTT TCTCTTTAAC TACTATTTTG
CTGCTTGTTG TTTCCTTTAT GCTGGCAATC TCCCTGATTT TCGCGTTGAA GCGCAGCTCG
TACCCTCGCT TTCTTGAAAA AGCAATGAAT CAGTATAAAG AGTCTGTTAT CAAGAAGCTT
TTACAGAAGA GTTATAGTGA TTTTTCGCTC GCGAATTCCG GCACGTATCT TTCTGTACTT
ACTAATGATT GTGAGCGTAT TCAAGAAAAG TATTTGAAGA AGATTTTTGA TTTTGTTCAA
GACGTTCTTA TGCTTGTAAG CTCTCTGGCT CTTATGATTT ATTATAGTCC ATTGCTCACT
GTTATTGCTC TTATTATTTC TGTGCTTCCA ATGGCGTGCT CGATTCTTAC AGCTAACGGA
ATTGCCACTC GCGAGGAGCA GGTTTCCAAG TCGAACGAGT CTTATACAGC CTTAACGAAG
GATGTTTTGA ACGGCGTTTC GGTTATTAAG AGTTTTAAGG CGGAGCAAGA GGTTATTAAC
CGTTATCAGA ATCAGTCGAT GGAGCTTGAG CATACGAAGA ATCTTCGCGA AAAAACGATG
ACTACTGTTT CTGCTCTTGG TACTATTTCA AGTCTTGGGA CTCAGCTTGG CGTGATGCTT
GTTGGCGCTT GGATGGTTAA CGCTCATGTT GGCGTTATTA CTGCTGGAAT GGTGTTAGCT
TTCACTAATT TGATGAACGG CGTGCTTCAG CCTATTGCAA GTCTTCCGCA AATGCTTGGC
GAGATGAAGG GTGCTAAGAA GCTTATTAGC AAGATGGCTG ATTATATGAG TAATGTTAAG
GAAGATTCTG GCGAGATCAT TGACGATTCT ATTAAAAGCG TTGTTTTGCG CGATGTTTCG
TACGCTTATG ACCTGGATCA TAAAGTCTTG AAAAATGTAA ATCTAACTTT GCAAGCTGGA
AAATCTTATG CAATAGTAGG ATCTTCTGGA GCTGGTAAGA GTAGTTTGAT TAATCTGCTT
ATGGGATACT ACAAGGATTA TGAAGGTAGT GTGAAGCTGA ATAATCACGA GCTTAGCAAT
GTGAGCAAGA GTTCGCTTTA CGATAAGACT ACTCTTATGC AGCAGTCTGT GTTTATGTTT
GATGCTTCGA TTTTAGATAA TATTACGCTT TTTAAGCCGT TCCCGAATGC GGAAGTTAAT
CGCGTGATTC ACTTGGCTGG TTTGGATGAT TTGATTGCTG CTAAAGGCAA GGATTATCAG
TGTGGCGAGA ATGGTAGTCA TCTTTCTGGC GGCGAAAAGC AGCGTATTGC TGTTGCGCGA
AGCTTGCTTA AAAAGTCCGA GATTCTGCTG GTTGATGAGG CAACGAGCGC GTTAGATAAC
GAGACGAGCG CGAACGTAAC GCAGTCTATT TTGGATTTGC AAGGAATTCT TCGACTTGTG
GTAACTCACC GCTTGGATGC TAATTCGCTT AAGCAATATG ATGAGATTCT TGTGATGAAA
AGCGGCGAGC TTATTGAGCG CGGAAGCTTT GAGGAGCTTA TGAATCAGAA GGCTTACTTC
TACTCGCTTT ACACTGTGTC TATGTGA
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| Protein sequence | MNKTDNTANQ QSLANQQSSK LHPDVKNYVK LFFKENKLVA FLSMIVFISL SMIYTAISWI
LQIIFDYMAG KGAFSLTTIL LLVVSFMLAI SLIFALKRSS YPRFLEKAMN QYKESVIKKL
LQKSYSDFSL ANSGTYLSVL TNDCERIQEK YLKKIFDFVQ DVLMLVSSLA LMIYYSPLLT
VIALIISVLP MACSILTANG IATREEQVSK SNESYTALTK DVLNGVSVIK SFKAEQEVIN
RYQNQSMELE HTKNLREKTM TTVSALGTIS SLGTQLGVML VGAWMVNAHV GVITAGMVLA
FTNLMNGVLQ PIASLPQMLG EMKGAKKLIS KMADYMSNVK EDSGEIIDDS IKSVVLRDVS
YAYDLDHKVL KNVNLTLQAG KSYAIVGSSG AGKSSLINLL MGYYKDYEGS VKLNNHELSN
VSKSSLYDKT TLMQQSVFMF DASILDNITL FKPFPNAEVN RVIHLAGLDD LIAAKGKDYQ
CGENGSHLSG GEKQRIAVAR SLLKKSEILL VDEATSALDN ETSANVTQSI LDLQGILRLV
VTHRLDANSL KQYDEILVMK SGELIERGSF EELMNQKAYF YSLYTVSM
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