Gene HMPREF0424_0391 details

Gene Information

• Locus tag: HMPREF0424_0391
• ID: 8708851
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: -
• Start bp: 420040
• End bp: 422046
• Gene Length: 2007 bp
• Protein Length: 668 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 646482507
• Product: tetratricopeptide repeat protein
• Protein accession: YP_003373641
• Protein GI: 283782887
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG2956] Predicted N-acetylglucosaminyl transferase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 21
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGAGGACG CTGCGCAATT TTATAACGAG CTTGACGAAA TGTTCGCGAA TCACGCGAGC 
GCAGACGCGA TTGAAACGTA TCTTTTGCGA AAACTTACCG AAGCCAATCC CCTGCAACTG 
TCTATTCTCA ACGAACTCAT GGGCTTTTAC CGTTCGCGCG GAGAGCACAC AAAAAATCAG 
CCAATCATCA ATCGCGCTCT AAATCTTGCA AACAAAATGC AGCTAGCTGG CACCGAAGCT 
GGCACAACCA CACTAATTAA CGCCGCCACA AGCCTCCGCG CGGCTGGCGA CTACGATCGC 
GCCGAAAAAA TTTACACTCA GGCTCTTAAC GAATCCGCCA TGACTCTTGG CGCCAAAAAT 
CGCAAGCTCG CCGCGCTTCA CAACAATCTT TCGATGCTTT ACAGCGAAAC CGGTCGCACG 
CATGATGCAA TTGAGGAGCT TAATCAGGCG CTTGAAATTT TGCAAAATAC GAGCACGGAT 
CCTGAGCGCG ACATCGATAT TGCCGCCACG CACACGAATC TTGCGCTTGC GATGCTGCAG 
GAGTGTACGA AGGAGTGCTC GCATCCCAAC ACCAGCACAA ACAGCAAATC CGCAACTCTT 
GAATCCGCTT TTGAACACGC TTCGACCAGC GTTCGCATGT ATATTGCGGG GAATAACGAA 
AATCAGCCGC ACTACGCTTC TGCATTGGCA GGTTTTGCGC AAGTACAGTG CGCGCGCGGC 
GAGTACGCTC AAGCGGAGGA GAGTTACAGT AAGGCACTTG ATTTGATTGC GAGATGCTAC 
GGAAAAGATA GCGAATCTTA CGCGATTACG ACGGAAAATT TGCGGCAGAC GCGCGAGTTG 
GCAGAAAAAG TTACGGAAGA ATCTATAGAA ATTCAAGAAT CAGCAAACCA AGATATAACA 
GAACAACACT CAACGAACTC ACACGCAGCA AACCAGAACG CAGCAACCCA GAACGCAGCA 
AACAATAACA TAAAAACCGG CATGCAATTA GCGCAATCAT ACTGGCAAAC TTACGGAAAG 
CCGTTACTTG ATCAGCCAAA ATTCGCGAGG TACAAAAATC GCATTGCAGC AGGATTAGTT 
GGTCACGGTT CGGAATGCTA CGGTTTTGAC GACGAAATTT CGCGCGACCA CGATTTTGGT 
CCCGGATTCT GCTTGTGGCT TACTGACGAA GATTACGCGG AAATTGGCGC GGATTTGCAA 
AACGCTTACA ACGCACTTCC GCAAAAATAC GCCGGTTTTG AATCTCGCAA CGAAACGCAG 
CGCGCCAAAT CATGCGAAAG CAGCAAGCGC GTCGGAATAT TTCGCATAAG CGAATTTTTC 
GAAAATATAA CCGGCTTCCC CACTGCCCCG GCCGCAAACG AGCCGCACTT ATGGCTCTCA 
TTAAGCGAGT CAACGCTTGC AGCAGCGACG AACGGAAAAA TTTTCGCAGA TCCTCTTGGC 
GAGTTCTCAA AAGCGCGCCA AAGCTTCAAA CTCATGCCGA ACGACGTGCG AATCTCACTA 
ATCTCGCGCA GACTTGGCAT GATTTCGCAA GCCGGCCAAT ACAATTTCCC ACGCATGATT 
GCGCGCAAAG ACGCATCCGC AGCATGGCTT TCTATCAACG AATTCGTGCG CGCAACTGCT 
TCCCTCGTTT TTCTGCTCAA CAATCCTGTA ACCGCAGGCT ACTTGCCTTA CTACAAGTGG 
CAGTTTGCGG CATTGCGCAA GCTCAGCAAT CGCATGGCAT CTAGGCTTCC GGAAGTATGC 
AGCAAACTTG AGTCGGTAAT GCGACTTTCT TCCGCTGCAT GCTTTGGCGG AGACGGTTCC 
GGCGGAGACG GTTTTGGCGA AGGCGGCAAG GGCGCTGGAC TTGCGCAAAA GCAAGTTACG 
CAAATAATTG ACAGCATTTG CGAAGATATT GTGCGAGAAT TGCAATATCA AGGCTTAAGC 
GATTGCAGCG AAACTTTTTT GGAATGGCAG CGGCCGTACG TTGAAGCACA TATTCACTCG 
CGTGCAGCAT GTTTGAAGAG CTTATGA 

 

Protein sequence

MEDAAQFYNE LDEMFANHAS ADAIETYLLR KLTEANPLQL SILNELMGFY RSRGEHTKNQ 
PIINRALNLA NKMQLAGTEA GTTTLINAAT SLRAAGDYDR AEKIYTQALN ESAMTLGAKN 
RKLAALHNNL SMLYSETGRT HDAIEELNQA LEILQNTSTD PERDIDIAAT HTNLALAMLQ 
ECTKECSHPN TSTNSKSATL ESAFEHASTS VRMYIAGNNE NQPHYASALA GFAQVQCARG 
EYAQAEESYS KALDLIARCY GKDSESYAIT TENLRQTREL AEKVTEESIE IQESANQDIT 
EQHSTNSHAA NQNAATQNAA NNNIKTGMQL AQSYWQTYGK PLLDQPKFAR YKNRIAAGLV 
GHGSECYGFD DEISRDHDFG PGFCLWLTDE DYAEIGADLQ NAYNALPQKY AGFESRNETQ 
RAKSCESSKR VGIFRISEFF ENITGFPTAP AANEPHLWLS LSESTLAAAT NGKIFADPLG 
EFSKARQSFK LMPNDVRISL ISRRLGMISQ AGQYNFPRMI ARKDASAAWL SINEFVRATA 
SLVFLLNNPV TAGYLPYYKW QFAALRKLSN RMASRLPEVC SKLESVMRLS SAACFGGDGS 
GGDGFGEGGK GAGLAQKQVT QIIDSICEDI VRELQYQGLS DCSETFLEWQ RPYVEAHIHS 
RAACLKSL