| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_3363 |
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| Symbol | |
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| ID | 3739107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 3779067 |
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| End bp | 3779939 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637780652 |
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| Product | PDZ/DHR/GLGF |
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| Protein accession | YP_386300 |
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| Protein GI | 78224553 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3031] Type II secretory pathway, component PulC |
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| TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0000000000344087 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.00365094 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAGA TTTATTTCAT AACCGCTCTT CTCCTCATTC TGAACTCTCT GGCACTCGCT
CGGATTGCGG CGGCCCTGGT GGGCTATCGC CTGTCCCATA CCCTTCAGAG CACCGTCAAT
CGTACCCACA ACGCCGTGAA ACCGGCCCAA TCAGAGGCGC TGTCAGCGTA TGCGCCCATT
GTCGAAAAGG GGCTCTTCGG GCGTGCGGCA CAGGGGAAGT TGACACTCCT CACAGCAACA
GCACCAGTTG CCAAGGGAAG CAACCCGCCA TCCGCTCAAG GGGACCTTGT CCTCGTCGGC
ACGGTACGGG GCTCATTCCG GGAGACCTTT GCCCTGATCA GGCGAACCAC GCCGCCCGAG
GAGCGGGTTT TCAGGCTCGG CGACCAGGTT TTCGAACGGG GCCCCCTCGT GAGCGTCCAA
AAGGAGAGTG TCGAAATTCT GTCCGGCGGA AAGCGGGTCA AATTGCTGAC ACCTCAGGCG
ACACCGTCTG AATCACCGGC ATCTCCTTCC CCCCAGGGAC CTGCCGTGAC AGGCGGGGCA
ACCCAAACCG GATCGGGGAC CTTCGTCGTC GACCAACGGC TCCTGAATGC GGCCCTCGAC
AACATCGGCC AGGCCATGAC CGACGCCCGG CTCCTCCCCA GCGTCAAGGA CGGCAAAGTG
GAGGGGTTCC GCGTTTCGGA GGTGAAACCG TCAGGGGTCT TTGCCATGGT AGGCATCAAA
AACGGCGATG TGCTGCACAA AATAAACGAT CTCCCCGTTG ACTCCCCTGA ACGGGCTATC
CAGTCCCTTG CCTCCCTCAA GGGGCAGAAC CGGATCAAGC TCGATCTGGT ACGGGACGGG
CAACCGTCAA CGTTCAGTTA CGACATACGC TAA
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| Protein sequence | MKKIYFITAL LLILNSLALA RIAAALVGYR LSHTLQSTVN RTHNAVKPAQ SEALSAYAPI
VEKGLFGRAA QGKLTLLTAT APVAKGSNPP SAQGDLVLVG TVRGSFRETF ALIRRTTPPE
ERVFRLGDQV FERGPLVSVQ KESVEILSGG KRVKLLTPQA TPSESPASPS PQGPAVTGGA
TQTGSGTFVV DQRLLNAALD NIGQAMTDAR LLPSVKDGKV EGFRVSEVKP SGVFAMVGIK
NGDVLHKIND LPVDSPERAI QSLASLKGQN RIKLDLVRDG QPSTFSYDIR
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