| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0395 |
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| Symbol | |
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| ID | 3739373 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 437164 |
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| End bp | 438903 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637777668 |
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| Product | RNA polymerase sigma factor RpoD-like |
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| Protein accession | YP_383363 |
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| Protein GI | 78221616 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.309099 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 84 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAGA AAAGTTCGGA CGAAGTTAAG CAGCAGCTGG TGGACATCGG CAAGGAGAAG
GGATTCCTTA CCTATGACGA AGTCAACGAC GTGCTGCCTC CCGACTTCTC AACGGAGCAG
ATTGACGATG TAATGAGCAT GTTCGGTGAG ATGGACATCG ACCTCGTCGA TTCATCGCAG
AAGGTCAAAA TCCCCAAGAT GAAGCTCGAC CTCGAAGAGG AAGAGGAGAT GGAGGGGGAG
CAGGAGGAGA TGGAGTACGA GCCGGGGGTC CTGGGGCGCA CGAGCGATCC GGTCCGGATG
TACCTGCGGG AAATGGGTTC CGTGTCGCTT CTCACGCGCG AAGGTGAGGT TGAGATCGCC
AAGCGGATCG AGGAAGGGGA ACGCGACATC GCCCGTGTCA TCCTTACCAC TCCCATTACC
GTCAAGGAGA TAATCGCCCT TGGCGACAAA CTCCGCAAGT TCCAGATAAG CGCGGCCGAG
ATCAGCAAGG AAGTTGAAGA AGAGGAACTG GAAGAGGACG AGGAAGACGT CCAGGCCAAT
CGCGTCCTCT CCATTATCGA TGAGATCCGG GATCTTGACG TGAGGATGGA GGCCATTGCC
GAAGAGCTCG ACGCTGAGGG CGCTGCTGCG AAACGCCAAA AAGAGCTCCA CGCCGAACAG
CACGAGATCA GGGAAAAGTT CGCCGATCTC GTGAAGTCCC TTCGGCTCAA GGACCGCCAC
ATCACCAAGA TTGCCCAGCG CCTCAAGGAA CTTTCGGGCA AAGTGGAAGC CATTCTGACA
GAGATTGCGG CGGTTGAAAC CGAAGCAGGC ATCAACGGCG AACGCCTCAA GGAGATTGTT
GCCAAGGGCG ACGAAAAGGC CAAGGGGCTC AAGGTAAACC TTGAGGATGC CCAAAAGCTC
GACAAGAAGA TCCGCGCCGC TGAGAAAAAG CTCAAGAAGC TGGAGCACGA GTCGGGCTTC
AAGGCCCAGG AACTTTCCGA CGCCCTCCAC GCCATCGACC GGGGCGAGGC CAAGGCGAAG
CTGGCCAAGT CCGAGCTGGT TGAAGCGAAC CTCCGGCTGG TGGTTTCCAT CGCCAAGAAG
TATACGAACC GGGGCCTCCA GTTCCTGGAC CTGATCCAGG AGGGGAACAT CGGTCTCATG
AAGGCGGTGG ACAAGTTCGA GTACCAGCGG GGGTACAAGT TCTCCACCTA CGCCACCTGG
TGGATTCGTC AGGCCATCAC CCGCGCCATC GCCGACCAGG CGAGGACCAT CCGGATTCCG
GTCCACATGA TCGAGACCAT CAATAAGCTG ATCCGGACCA GCCGCCAACT GGTGCAGGAA
ATCGGCCGGG AGCCGTCGCC CGAGGAAATC GCCGAGCGGA TGAATCTCCC CCTCGACAAG
GTACGCAAGG TTCTCAAGAT CGCCAAAGAA CCCATCTCCC TCGAAACCCC CATCGGGGAG
GAGGAAGATT CGCATCTAGG GGATTTCATT GAGGACAAGG GGGTCGTTTC GCCCCTAGAG
GCGGTCATCA AGGCCAACCT CTCGGAGCAG ACCTCCCGGG TCCTCTCCAC CCTCACCCCC
CGGGAGGAGA AGGTGCTCCG GATGCGCTTC GGCATTGGCG AGAAGAGCGA CCACACCCTG
GAGGAAGTGG GGCAGGATTT CGAGGTTACC CGCGAGCGGA TCCGGCAGAT CGAGGCCAAG
GCCCTGCGGA AACTCCGGCA CCCGAGCCGG GCCAAGAAGC TCAAGAGCTT CGTGGAATAG
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| Protein sequence | MAKKSSDEVK QQLVDIGKEK GFLTYDEVND VLPPDFSTEQ IDDVMSMFGE MDIDLVDSSQ
KVKIPKMKLD LEEEEEMEGE QEEMEYEPGV LGRTSDPVRM YLREMGSVSL LTREGEVEIA
KRIEEGERDI ARVILTTPIT VKEIIALGDK LRKFQISAAE ISKEVEEEEL EEDEEDVQAN
RVLSIIDEIR DLDVRMEAIA EELDAEGAAA KRQKELHAEQ HEIREKFADL VKSLRLKDRH
ITKIAQRLKE LSGKVEAILT EIAAVETEAG INGERLKEIV AKGDEKAKGL KVNLEDAQKL
DKKIRAAEKK LKKLEHESGF KAQELSDALH AIDRGEAKAK LAKSELVEAN LRLVVSIAKK
YTNRGLQFLD LIQEGNIGLM KAVDKFEYQR GYKFSTYATW WIRQAITRAI ADQARTIRIP
VHMIETINKL IRTSRQLVQE IGREPSPEEI AERMNLPLDK VRKVLKIAKE PISLETPIGE
EEDSHLGDFI EDKGVVSPLE AVIKANLSEQ TSRVLSTLTP REEKVLRMRF GIGEKSDHTL
EEVGQDFEVT RERIRQIEAK ALRKLRHPSR AKKLKSFVE
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