| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Glov_0502 |
|---|
| Symbol | hemC |
|---|
| ID | 6367435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter lovleyi SZ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010814 |
|---|
| Strand | - |
|---|
| Start bp | 477622 |
|---|
| End bp | 478560 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642675895 |
|---|
| Product | porphobilinogen deaminase |
|---|
| Protein accession | YP_001950750 |
|---|
| Protein GI | 189423573 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0181] Porphobilinogen deaminase |
|---|
| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000513467 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACCTA AACGCCTCCG CATAGGCACC CGCGCCAGCC AGCTGGCCCT CTGGCAGGCC
AACTGGACCA AATCGGAACT GGAAGCAAGG TATCCCGGCA TCCAGGTTGA ACTGGTCAAG
ATCAAGACCA TGGGAGACAA GATCCTGGAT GTCCCACTGG CACAGGTTGG TGGCAAAGGA
CTGTTTGTCA AAGAGATCGA AGAGGCAATG CTGCGGGGTG AGATCGACCT GGCCGTACAC
AGCATGAAGG ATGTCCCGAC TGAGTTCCCT GAAGGACTGG GACTGGTGGT AACCACCAAG
CGTGAAGACC CCCGTGACGC CTTTATCTCG GACAAGGTAA CATTCAGCGA ACTGCGCCAG
GGAGCCAGAA TAGGCACCAG TGCCCTGCGC AGACAGGCCC AGCTGCTCAA GGCGCGGCCC
GACCTGGAGA TGGTGATTAT CCGCGGCAAC GTTGAGACCC GTATTCGCAA GCTGAAGGAA
GACAATCTGG ATGCCGTGAT CCTGGCAGCG GCCGGCCTGA ACCGGCTCGG CTTCACCGAC
GTGGTGACCG AGCTGCTGGA TACGGACTTC TCGATCCCGG CCATCGGCCA GGGCGCCCTG
GGACTGGAGT GCCGCCTGGA TGACAACGCC ACCATCGAGG CGCTGGCCTT CCTGAATCAT
GCCGATACCG CTGCTGCAGT GGCCGCAGAA CGGGCGCTGC TCAAACGCTG TGAAGGTGGT
TGCCAGGTAC CGATTGCCGC CCACGGCACG GTGAGCGGTG ACACCCTGAC CCTGGTCGGT
TTTATCGCCT CGGTGGATGG CAAACAGACG GTACGGGACC GCATCAGCGG ATCAACAGCG
GATGCGGTAA AACTGGGAAC AGAACTGGCC GACCGGTTGC TGGCAGCTGG AGGCAAGGCG
ATTCTGGAAG ATGTCTACCA GCGGGAAATT GCCCACTAG
|
|---|
| Protein sequence | MAPKRLRIGT RASQLALWQA NWTKSELEAR YPGIQVELVK IKTMGDKILD VPLAQVGGKG
LFVKEIEEAM LRGEIDLAVH SMKDVPTEFP EGLGLVVTTK REDPRDAFIS DKVTFSELRQ
GARIGTSALR RQAQLLKARP DLEMVIIRGN VETRIRKLKE DNLDAVILAA AGLNRLGFTD
VVTELLDTDF SIPAIGQGAL GLECRLDDNA TIEALAFLNH ADTAAAVAAE RALLKRCEGG
CQVPIAAHGT VSGDTLTLVG FIASVDGKQT VRDRISGSTA DAVKLGTELA DRLLAAGGKA
ILEDVYQREI AH
|
|---|
| |