Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbro_1560 |
Symbol | |
ID | 8550908 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gordonia bronchialis DSM 43247 |
Kingdom | Bacteria |
Replicon accession | NC_013441 |
Strand | + |
Start bp | 1623126 |
End bp | 1626713 |
Gene Length | 3588 bp |
Protein Length | 1195 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | |
Product | transcription-repair coupling factor |
Protein accession | YP_003272728 |
Protein GI | 262201520 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.93701 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGTCGACTC CGCGTGCCCT CGTCGGGCTT TCCGAGCTGG CCTGTGCAGA CACCGCGATC TCGGGAATCC GCGCCCGGCG TGACGAAGTG CACGTCGACC TCACCGCCCC CGACGCCGCC CGCCCCTTTG TGGTGGCCTG CCTCGCCAAG GACGCCGATG CGCCCCTGCT CGTGGTCTCG GCCAACGGAC GCGAGGCCGA CGATCTGACC GCCGAACTGG CCGAACTGCT CGACGAGCCC GACGCGGTGG CCCAGTTCCC GTCATGGGAG ACGCTCCCGC ATGAGCGGCT CTCGCCCAGC GCGGACACGG TCGGTGCGCG ATTGGCGGTG CTGCATCGGC TCGCCAACCC CGGGGATTCG CCGTTGCGCG TGGTGGTCAC GACGGTGCGG TCGCTGGTGC AGCCGATGGC GCCCGGACTC GGCGACGTCG CCACCATCAG CCTCGCCGAG GGCTTCGAGA TCGACTTCGA CGGCCTGCTC ACCGATCTCG TCGAGATGGC CTACGAGCGG GTGGACATGG TCGGCCGCCG CGGTGAGTTC GCGGTGCGCG GCGGAATCCT CGATGTCTTC CCGACGACCG CCGACTACCC GGTCCGTGTG GAGTTCTGGG GCGACGAGAT CACCGAGATG CGGGCCTTCT CGGTCGCCGA TCAACGTAGC CAGCCCGAGG TCGAGGCGAC CCGGGTGGAC ATCCATCCGT GCCGTGAACT GCTGCTTACC GATGAGATCC GTACTCGCGC AGCTGAACTC GCGTCACAGT TCGAAGGTGA TCCGACGCTG GCCGAGATGC TGACCAAGCT CGCCGAGGGT ATCCCGGTCA ACGGGATGGA GGCCCTGATC CCCGCTCTGG TCGACGGGCG GATGCAGCTG CTCACCGAGG TGGTCCCGGC CGGCACACGG GTGCTCATCC TGGATCCGGA GAAGGTCCGC ACCCGGGCGG CCGACCTGTC GAAGACGGGC GCGGAGTTCC TGGAGGCGTC GTGGACGGCC GCCGCGATGG GTGCGCAGGG GCCGCTGGAC GGACGGTCCT CGCAGGCGCT CGGCGTCGAC CTGCAGGCCA GTGCCTACCG TCCGCTCGAC GAGGTGCGCG AGACGACGCT CGCCGCCGGA CGGTCCTGGT GGACGATCAG CCCGCTGGCC ACCGGTGACG ATCACGAGGT GGTGCTCGAC CTCGCGCCGG GGCCGGCTCC GCGCGGCGAC GACAACGAGA TCGTTGCGGT ATTCGCCCAG TTGCGTGCCC ATGTCCGAGC CGGGCAGACG GCGGCAATCG TGGTGGCGGG CAAGGGAACC GCTCAGCGGG TGGGTGAGCG GCTGGCCGAT GCCGAGGTTC CGCACGTCAT CGCCGAACCG GGCCATCGGC CCGCCCCGGG TGAGGTGAGC GTCTTCGGCG GTACCCTGCG CCACGGGCTG GTGTGCCCGG ACGCCGGCCT GGTCATCGTC ACCGAGGCCG ACCTGACCGG TACCCGCGTC GCGAATGTCC GTGACGGACG CAAACTTCCG GCCAAGCGTC GCAATCAGGT CGACCCGCTG GCGCTCACCG CGGGCGACCT CGTGGTCCAC GACCAGCACG GCATCGGCAA GTTCGTGGAG ATGATCGAGC GCACGGTGTC GGGTGCGCGA CGCGAGTACC TGGTGCTCGA GTACGCGCCG TCCAAACGGG GGCAGCCCGG CGACCGCCTG TACGTGCCGA TGGATGCCCT CGATCAGTTG TCGCGGTACG TCGGTGGTGA GCAGCCGTCG CTGTCCAAGC TCGGCGGCTC GGACTGGCAG AACACCAAAC GCAAGGCGCG CAAGGCGGTC CGCGAGATCG CCGGTGAGCT GGTGCAGCTG TATGCGGCCC GGCACGCGGC CCCGGGACAT GCCTTCGGGC CGGACACTCC GTGGCAGCAG GAGATGGAGG ACGCCTTCGA CTTCACCGAG ACCGTCGATC AGATGACGGT GATCGGCGAG GTGAAGGCCG ACATGGAGCG TCCGGTGCCG ATGGATCGCG TCATCGTCGG CGACGTGGGC TACGGCAAGA CCGAGATCGC GGTGCGCGCG GCCTTCAAGG CAGTACAGGA CGGCAAGCAG GTCGCTGTCC TCGTTCCGAC GACAATCCTT GCGCAACAGC ATCTTCAGAC ATTCTCCGAG CGAATGTCGG GATTTCCGGT GCGGGTTCGC GGACTGTCCC GCTTCACCGA CGCCCGTGAG TCCCGGGAGA TCATCGACGC GATGGCGACC GGTGAGGTGG ACATCGTGAT CGGAACCCAC CGCCTCCTGC AGACCGGTGT CACCTGGAAA GACCTCGGTC TGGTCATCGT CGACGAGGAA CAGCGGTTCG GCGTCGAGCA CAAGGAACAC ATCAAATCCC TGCGGACCCA CGTCGATGTG CTGACCATGT CGGCCACGCC CATCCCGCGC ACCCTGGAGA TGTCGATGGC CGGCATCCGC GAGATGTCGA CGATCCTCAC CCCGCCGGAG GAGCGGCACC CGGTGCTGAC CTATGTGGGT GCCTACGCCC CCAAACAGGT TGCCGCCGCC ATCCGGCGCG AGTTGCTGCG CGACGGTCAG GTGTTCTACG TGCACAACCG GGTCTCGACA ATCGACAAGA CCGCCCGCGA CATCGCCGCG ATGGTTCCCG AGGCGAGAGT TGTTGTGGCG CACGGCCAGA TGAACGAGGA TCAACTGGAG AAGACGGTCT CCGGGTTCTG GAACCGCGAG TTCGACGTGC TGGTGTGTAC CACCATCATC GAGACCGGCC TGGACATCTC CAACGCCAAC ACCCTGATCG TCGACCGTGC CGAGAACCTG GGGCTGTCGC AGCTGCATCA GCTGCGGGGC CGGGTGGGCC GCAGCCGCGA ACGCGGCTAC GCCTATCTGC TCTACAGCCC GGAACGTCCG CTGACCGAGA CCGCCTACGA CCGGCTGGCC ACCATCGCGC AGAACAACGA GCTCGGTGCC GGAATGGCGG TGGCGCTCAA GGATCTCGAG TTGCGTGGTG CCGGAAACGT GCTCGGTGCC GAACAGTCCG GGCACGTCGC CGGCGTCGGG TTCGATCTGT ACGTGCGGCT CGTCGGCGAG GCGGTGGAGG CCTATCGGGC CGCTGCGGAC GGACAGCCGG TGACCTCGCG TGAGACCGAG GAGGTGCGCA TCGACCTGCC GGTCGACGCC CACATCCCGG TCGAGTACGT CGATTCCGAT CGTCTGCGCC TCGAGGCGTA CCGCAAACTG GCGTCGGCCA TCGACGACGC GGCCGTCGAC GGCGTCATCG CCGAGCTGAC CGACCGTTAC GGCGAACCGC CTGTGGAGAC CACCCGGTTG GCAGCGATCG CCCGGCTGCG GCTGCGCTGC CGCGAACGGG GGATCACCGA AATCGGTTTG GCCGGAACAG GTCTGAAGAT CTCGCCGTTG CCGCTGCTGG ACAGCGAGCA GGTGCGCCTC AAACGTCTGT ACTCGGCGGC CAACTACCGG GCCACCACCT CGGTGGTGAC GTTGCCGATC CCGCGGACCG GGGGAGTCGG CTCGGCCCGG CTGCGCGACG ACGAACTGAT CGTCTACCTG ACGACCTTCC TCACCCAGCT CAAACCACTT GCCGAGACGA GGTCGTAG
|
Protein sequence | MSTPRALVGL SELACADTAI SGIRARRDEV HVDLTAPDAA RPFVVACLAK DADAPLLVVS ANGREADDLT AELAELLDEP DAVAQFPSWE TLPHERLSPS ADTVGARLAV LHRLANPGDS PLRVVVTTVR SLVQPMAPGL GDVATISLAE GFEIDFDGLL TDLVEMAYER VDMVGRRGEF AVRGGILDVF PTTADYPVRV EFWGDEITEM RAFSVADQRS QPEVEATRVD IHPCRELLLT DEIRTRAAEL ASQFEGDPTL AEMLTKLAEG IPVNGMEALI PALVDGRMQL LTEVVPAGTR VLILDPEKVR TRAADLSKTG AEFLEASWTA AAMGAQGPLD GRSSQALGVD LQASAYRPLD EVRETTLAAG RSWWTISPLA TGDDHEVVLD LAPGPAPRGD DNEIVAVFAQ LRAHVRAGQT AAIVVAGKGT AQRVGERLAD AEVPHVIAEP GHRPAPGEVS VFGGTLRHGL VCPDAGLVIV TEADLTGTRV ANVRDGRKLP AKRRNQVDPL ALTAGDLVVH DQHGIGKFVE MIERTVSGAR REYLVLEYAP SKRGQPGDRL YVPMDALDQL SRYVGGEQPS LSKLGGSDWQ NTKRKARKAV REIAGELVQL YAARHAAPGH AFGPDTPWQQ EMEDAFDFTE TVDQMTVIGE VKADMERPVP MDRVIVGDVG YGKTEIAVRA AFKAVQDGKQ VAVLVPTTIL AQQHLQTFSE RMSGFPVRVR GLSRFTDARE SREIIDAMAT GEVDIVIGTH RLLQTGVTWK DLGLVIVDEE QRFGVEHKEH IKSLRTHVDV LTMSATPIPR TLEMSMAGIR EMSTILTPPE ERHPVLTYVG AYAPKQVAAA IRRELLRDGQ VFYVHNRVST IDKTARDIAA MVPEARVVVA HGQMNEDQLE KTVSGFWNRE FDVLVCTTII ETGLDISNAN TLIVDRAENL GLSQLHQLRG RVGRSRERGY AYLLYSPERP LTETAYDRLA TIAQNNELGA GMAVALKDLE LRGAGNVLGA EQSGHVAGVG FDLYVRLVGE AVEAYRAAAD GQPVTSRETE EVRIDLPVDA HIPVEYVDSD RLRLEAYRKL ASAIDDAAVD GVIAELTDRY GEPPVETTRL AAIARLRLRC RERGITEIGL AGTGLKISPL PLLDSEQVRL KRLYSAANYR ATTSVVTLPI PRTGGVGSAR LRDDELIVYL TTFLTQLKPL AETRS
|
| |