Gene Gbem_3718 details

Gene Information

• Locus tag: Gbem_3718
• ID: 6780582
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter bemidjiensis Bem
• Kingdom: Bacteria
• Replicon accession: NC_011146
• Strand: +
• Start bp: 4242181
• End bp: 4244031
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 642769713
• Product: Tetratricopeptide TPR_2 repeat protein
• Protein accession: YP_002140506
• Protein GI: 197120079
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3063] Tfp pilus assembly protein PilF

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCAGC TAGTAACCCG CCCCAGCGGC GCGGTCGCGG TCCTGCAAGA CGGGCCGCTT 
CTTTCCGCCA TCCTGATCAC CAGCAACAGG GAATCGCACC TGAGGGAATG CCTGTGCGAA 
CTGATGCAGC AGAGCATCTC CAACCGCATG GAGGTGATCG TGGTCGACCA GGGGTCGGAG 
CAGTGCGAAT GGGCCGTGGT GGCCGACCTG CAGAAGATCC ACCCAAACCT GATCTCCCTG 
AAGCTTCCGG CGGCCGCAGG CGGCAAGGGG GTCGAAATGG CGCTCAGGAT CGCCTCGGGC 
AAGTACGCGA CACTTCTGGA GGCAACCGAC CGCTTGAAGC GAGACGCTTA TGAGCTCTTG 
ACGGCGGCCC TGGAGGGAAA CCCCGCCGCC ATGCTCGCCT ACGGCGACAC CTGCTTCACC 
GCCATCCCCC ACGAGAGCTT CGCCAGCCAC ACAAGCTACG GCAAGGTGAT CTGGCCCGAC 
TACACCTCCC AGCAACTGGC CCAGCTCTCC GAGGTGGCCC CGCACCCGGT ATGGCGCAGA 
GAACTGCACG ACAGCGTAGG CTTCCTGCCG CAGGGGTACC CGAACCACGG GATGCGCGAG 
TTCATGCTCA AGGTAGTGGA GCGCTTCCGC ATCCTGCACC TGGAGGAGTT CACCGGCCTC 
AAGCTGATCA CCGCGAACCA GGCGCCGGTC CAGGCGGCCC ATCCGCAGGC GCGCCCCCAA 
CCCGCGCCGA GCGCCTATCG CGCTCCCGAG CCGGAACCAG TCATCCCCGC CCCTCCGGTC 
AGCTTCGAAC AGCCGAGCGC GCCGGCAGCG CCGGTTTACA GCCAGAGCGC GGCGGCTGCC 
TCGACCCAAA CCGCCGGGCA GCAGAAAACG GCGAACTCGG AACTGAAAGG GGCGGACCAG 
GCGTACCAGG AACTTCGTTC CGTCGTCACC GGAGAAGACC CGCAGCGGGC CGCAGCGGCG 
CTCCGTGAGC ACCTCGCGCG CTTCCCCAAG CACGCCATGG CCCACAACGA CCTGGCAGCC 
GTCAGCTATC AACTCGGAGA GAAAGAGCAG GCGCTCAAGC ATTACCGCGA GGCGGTCTGG 
CTCGATCCCA AAGAGAGCGT CTACCTGAAG AACCTGGCCG ACATCCTTTT CGTCGAGGCG 
GGAGAGGCCG ACGAGGCGAT AGCGATCTAC CTGAAGCTCC TGGAGCAGTC GCCGCGCGAC 
GTCGAGACCC TGCTGAACTT GGGGATCATC TGCGAGAGCG TGGGGCAGCC CGCCGAGGCG 
GATTCCTTCT ATCAGAGAGC GCTTGAGATC GAGCCCTGGA ACCAGGCCGC ACGGCAGCAA 
CTGACCGCGC TGCGCCAGAG GACGGAAGAG CCGCAGTCCG CCGCGGCGCC AGAAGAGGAC 
GATCTTTGCG CCGAGGATCG GTACCAGAGG TCCCAGGAAC TCGTCTCCCA GGGGGACCTG 
GACGGGGCGT TCCAGGAACT GAAGCAGATC CTCTCCTCTT ACCCCGACTT CGCCCCCGCG 
CACAACGACC TGGCCGTCCT GGCCTACCAG CAGGGTGACA AGGAGCAGGC CCGCGCCCAC 
TACGAGAAGG CGGCGGAACT TGCGCCCGAA AACGGCACCT TCCAAAAGAA CCTGGCCGAT 
TTCTACTTCG TCGAAGGGTA CGACGTCGAC GGGGCCATCG CCATCTACCT GGAACAGCTC 
CGCAGGGAGC CCAAGAACAT CGAGACGCTG ATGGGGCTCG GAAAGATCTG CACCATGCTG 
GACCGCCCGA CAGAGGCGCA GAGCTTCTAC GGCAAAGTGA TCAACCTGGA GCCGTGGAAC 
CGCGATGCCC GCGACTGCCT CAACAGTCTG AAGGAGGTGG CGAACGGCTG A 

 

Protein sequence

MSQLVTRPSG AVAVLQDGPL LSAILITSNR ESHLRECLCE LMQQSISNRM EVIVVDQGSE 
QCEWAVVADL QKIHPNLISL KLPAAAGGKG VEMALRIASG KYATLLEATD RLKRDAYELL 
TAALEGNPAA MLAYGDTCFT AIPHESFASH TSYGKVIWPD YTSQQLAQLS EVAPHPVWRR 
ELHDSVGFLP QGYPNHGMRE FMLKVVERFR ILHLEEFTGL KLITANQAPV QAAHPQARPQ 
PAPSAYRAPE PEPVIPAPPV SFEQPSAPAA PVYSQSAAAA STQTAGQQKT ANSELKGADQ 
AYQELRSVVT GEDPQRAAAA LREHLARFPK HAMAHNDLAA VSYQLGEKEQ ALKHYREAVW 
LDPKESVYLK NLADILFVEA GEADEAIAIY LKLLEQSPRD VETLLNLGII CESVGQPAEA 
DSFYQRALEI EPWNQAARQQ LTALRQRTEE PQSAAAPEED DLCAEDRYQR SQELVSQGDL 
DGAFQELKQI LSSYPDFAPA HNDLAVLAYQ QGDKEQARAH YEKAAELAPE NGTFQKNLAD 
FYFVEGYDVD GAIAIYLEQL RREPKNIETL MGLGKICTML DRPTEAQSFY GKVINLEPWN 
RDARDCLNSL KEVANG