| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3360 |
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| Symbol | |
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| ID | 6780218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | + |
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| Start bp | 3861485 |
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| End bp | 3863527 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642769351 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_002140151 |
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| Protein GI | 197119724 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0001243 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCTCCC CTTTCAAGCA CCCCATATCA AACGCACTCA CCTCATTCAA CGGTAACGTT
GCAGAGCCAG AGCAAAGCGT CGAGCAACAG AGTGGAGCAA AGGTGCACCA CCTTCCTGCT
TCAATCTGGA AGCGGAAGAT GGGCAGGGCT AAGAGCCCCC TGGATGTGGC CATTGAAGGA
AGCCGCGATT TTTTCTTTCA GGAACAGCTA CCCAAAGGTT ATTGGTGGGC AGAACTCGAA
TCCAATGTCA CCATCACCGC CGAATACATC ATGCTGTTCC ATTTCCTTGG GCTGGTTGAT
CCTGAGCGCC AGCGCAAGAT GTCAACCTAC CTGCTCTCTA AACAGACCGA AGAAGGTTTC
TGGACCATCT ATTACGGCGG ACCTGGCGAT CTCTCTACCA CCATAGAGGC CTATTTCGCC
CTGAAACTCT CCGGTTACCC GGAGGACCAC CCGGCCCTGG CGAAGGCGCG CGCCTTCATC
CTGGAGCAGG GGGGGGTCGT CAAGAGCCGC GTCTTCACCA AGATCTTCCT GGCGCTCTTC
GGCGAGTTCG ACTGGCAGGG GATCCCGAGC ATGCCGGTTG AGCTGAACCT CCTGCCGGAC
TGGGCCTACA TCAACATCTA CGAATTCTCC AGTTGGGCCA GGGCGACCAT TGTCCCGCTT
TCCGTGGTGA TGCACAGCCG CCCGGTGCGC CGCGTCCCCC CTTCCGCGCG GGTACAGGAA
CTCTTCGTGC GGCAGCCCAC GGCGGCGGAC TACAGCTTCG CCAAAAACGA CGGCCTCTTC
ACCTGGGAGA AATTTTTCCT AGGTCTCGAC CGCGTGCTCA AGGTGTACGA GAAGAGCCCG
CTGCGCCCGT TCAAGAAGAC GGCGCTGGCC AAGGCGGAGG AGTGGGTGCT GGAGCACCAG
GAACCGACCG GCGACTGGGG AGGCATCCAG CCTGCCATGC TGAACGCCAT CCTTGCGCTC
AACGTGCTGG GGTACCGGAA CGACCACCCC GCGGTGGAAC AGGGGTTGAG GGCGCTGGCG
AACTTCTGCA TCGAGACCGA GGACCAGCTG GTGCTGCAGT CCTGCGTCTC CCCGGTGTGG
GACACGGCGC TGGCGTTAAA GGCGCTATTG GATGCGGGCG TTCCTCCCGA CCACCCCTCC
CTGGTGAAGG GGGCCCAGTG GCTTCTGGAC AAGGAGGTGA CCCGGGCAGG CGACTGGCGC
GTCAAGTCCC CCAACCTGGA AGCCGGCGGT TGGGCCTTCG AATTCCTGAA CGACTGGTAC
CCGGACGTGG ACGACTCCGG CTTCGTCATG ATCGCCCTGA AGGGGATCCA GGTGAAGGAC
CACAAGGCCA TGGACGCCGC CATCAAGCGC GGCATCAACT GGTGCCTGGG GATGCAGAGC
AAGAACGGCG GCTGGGGGGC GTTCGACAAG GACAACACCA AGCACGTACT GAACAAGATC
CCCTTTGCCG ATCTGGAGGC GCTCATCGAT CCCCCAACCG CGGACCTGAC CGGCCGCATG
CTGGAGCTGA TGGGAACCTT CGACTACCCT GTCACCTTCC CTGCGGCGCA GCGCGCCATC
GAATTCCTGA AGAAGAACCA GGAGCCGGAG GGGCCCTGGT GGGGGCGCTG GGGGGTCAAC
TACCTTTACG GCACCTGGTC CGTCCTTTGC GGGCTGGCCG CCATAGGCGA AGACATGGAT
CAGCCTTACA TCCGCAAGGC GGTGAACTGG ATCAAGTCGC GCCAGAACAT CGACGGCGGG
TGGGGCGAGA CCTGCCAGTC GTACCACGAC CGGACCCTGG CAGGGGTCGG CGAGAGCACC
CCTTCCCAGA CGGGATGGGC GCTCCTAAGC CTTCTGGCGG CCGGCGAGAT GCACTCGGCG
ACCGTGGTGC GTGGGGTGCA GTACCTGATC TCGACCCAGA ACAGCGACGG GACCTGGGAC
GAGCAGCAGT ACACCGGGAC CGGGTTCCCC AAGTACTTCA TGATCAAGTA CCACATCTAC
CGCAACTGCT TCCCGCTCAT GGCCCTGGGG ACCTACCGCA CCCTGACCAG GACGCAGCCG
TGA
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| Protein sequence | MTSPFKHPIS NALTSFNGNV AEPEQSVEQQ SGAKVHHLPA SIWKRKMGRA KSPLDVAIEG
SRDFFFQEQL PKGYWWAELE SNVTITAEYI MLFHFLGLVD PERQRKMSTY LLSKQTEEGF
WTIYYGGPGD LSTTIEAYFA LKLSGYPEDH PALAKARAFI LEQGGVVKSR VFTKIFLALF
GEFDWQGIPS MPVELNLLPD WAYINIYEFS SWARATIVPL SVVMHSRPVR RVPPSARVQE
LFVRQPTAAD YSFAKNDGLF TWEKFFLGLD RVLKVYEKSP LRPFKKTALA KAEEWVLEHQ
EPTGDWGGIQ PAMLNAILAL NVLGYRNDHP AVEQGLRALA NFCIETEDQL VLQSCVSPVW
DTALALKALL DAGVPPDHPS LVKGAQWLLD KEVTRAGDWR VKSPNLEAGG WAFEFLNDWY
PDVDDSGFVM IALKGIQVKD HKAMDAAIKR GINWCLGMQS KNGGWGAFDK DNTKHVLNKI
PFADLEALID PPTADLTGRM LELMGTFDYP VTFPAAQRAI EFLKKNQEPE GPWWGRWGVN
YLYGTWSVLC GLAAIGEDMD QPYIRKAVNW IKSRQNIDGG WGETCQSYHD RTLAGVGEST
PSQTGWALLS LLAAGEMHSA TVVRGVQYLI STQNSDGTWD EQQYTGTGFP KYFMIKYHIY
RNCFPLMALG TYRTLTRTQP
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