Gene GSU3166 details

Gene Information

• Locus tag: GSU3166
• ID: 2685222
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sulfurreducens PCA
• Kingdom: Bacteria
• Replicon accession: NC_002939
• Strand: +
• Start bp: 3470702
• End bp: 3474154
• Gene Length: 3453 bp
• Protein Length: 1150 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 637127859
• Product: hypothetical protein
• Protein accession: NP_954207
• Protein GI: 39998256
• COG category: [S] Function unknown
• COG ID: [COG3523] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03348] type VI secretion protein IcmF

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGAAAT CGCTGAAATG GCTGCTGCTG GCGAGTGTCG TCGTGCTCAC GGTATTCCTG 
GTGGCCGGGA TCGTCCTGGC GCTCGACTGG CCCTGGTGGG TGACCTTCTG CCTGTTGCTG 
CTCCTTGCCG GAATCGCAGC GGGGGCCATA CTGCTGCGGT CCCTACTGCT GCGGCGCCGG 
GAGCGACACT TCGTCAGGGA GGTTATCGAG CAGGAAAAAG ACACCCTCTC CACCCTGTCA 
GACGGAAGCC GTACGCATCT GGACCAGCTC GCTCAACAGT GGAAAGAAGG GGTGGGAGCC 
CTCAGAGGCT CGCACCTCAA GCGACGGGGC AACCCCCTCT ACGTGCTCCC CTGGTACCTG 
GTCATCGGCG AGAGCGGTTC CGGCAAGAGC ACGAGCCTTG CCAGCGCCCG TCTCCCCTCT 
CCCTACACCG ATTCCCGACG GTCCGCCGAT GATGCCGGTA CGCGCAACTG CGACTGGTGG 
TTCTTCGAAG AGTCCGTCGT GCTCGACACG GCGGGCCGTT ACGCCGTGCC GGTCAACGGG 
GAGCGGGACC GGGACGAATG GCAGAAGCTC CTGGCGCTGC TGGTCAGGCA CCGGAGACGC 
GAACCCCTGA ACGGTCTCGT CCTGACCGTG GCGGCAGACC GACTCCTTGC CGGCGGACGG 
GAGGAAAACG CCGAGGAGGG GCGTACCATG CGCCGCCGGG TGGATGAACT GATGCGCGCC 
CTGGGGGTGC GGGTACCGGT TTACGTGCTC GTAACCAAGT GTGACCTTAT CGAAGGGATG 
AACTGCTTCG CCGAACTTCT GCCGGAAAAG GCGCTGCGCC AGCCCATGGG CATGATCAAC 
CGAGATCTGA CCGCCAACGT GGGCTCGTTC ACGGCCAGGA CCATGGAGAC GGTAACCGAG 
CGACTCAGAA GTCTCAGGCT CCAGATCCTC CACCGGCCCG AAGCCCGCGA CGCGACGCCG 
GCTCTCGCCT TTTTCCCCGA GGAATTCGCA GGGCTCCGCG AAGGGCTCAC CGCGTTCATG 
GAAGGGACGT TCCGCGAAAA CCCCTATCAG GAAACCCCGT TGCTGCGAGG GGTGTTCTTC 
GCCAGCGGCC GTCAGGCCGG CAGCCCCCGT TCCCGGTTCA GCGGGACACT GGGCACCGTT 
GCCGGGCCCC AACCGCTCCC CGACACCAGC CGTGGCATCT TCCTCCACGA CTTCTTTGCC 
CGGGTCCTTC CCGCCGACCG GGCACTCCTG ACCCCGACAC AACGGTCTGT CCAGTGGCGC 
ACCGTCACCG GCAACCTCGG GCTCCTCTCC TGGCTGCTGG TGGGGCTGGC CCTGTGTGGC 
CTCTTGTCGT TTTCCTTCGT GAAGAACATG GCCACCATTC GCGAGGTATC GCGCCAATTC 
GAACGGACGC CGCCCATCAA TGCTGATCCG GTGAATAATC TCCTGGTCCT GGAGAGCCTT 
CGCCAGGGGA TTCTGCGCGT GGAAGAGCAG AATCGCGCCT GGTGGGTGCC CCGGTTCGGC 
CTTAATGAAA GCCGGCGGGT TGAAGCTGTT CTCAAGGACA AGTTCTGCAA CCAGTTCCGG 
GATGGCTTTC TCGCCCCCTA TGACCGTCAC CTGGCCGAAG AGCTGAACGG TCTCTCCGCG 
GCCACGCCGG ACGAACTCTT TGCCCGGTAC GCCATCCACC TGACGCGACG GATCAACATC 
CTTACCGCCA GCCGGGCAGG CAGGGGGCTC GATGAACTGC GCGCCCTCCC TCAGCCGGCG 
TCCCTGTCGT TCATGGCCGC TGAGACGCCG TCGGTCGCCG ACGCGCACAA GCGGTTCGGA 
GAGCTCTATC TCCACTATCT TGCATGGCGA TCCGACTCTC CCGACTTGGC CCGCGAGGCG 
GCCCAGCTCC AGGGCTGGCT CAGGCGGTCC CTCGCGCTCA AAACCGACAG CCTTTCCTGG 
CTCGCCCCCT GGGTTGACCG TCATGGGGGG CTATCACCCG TAACCCTGGC GGAGTTCTGG 
GGAGGAAGCG TGCCGGCCCC GGATGAGCCG ACGATCACCC CGTCCTTCAC CGGCAAGGGT 
AAAGACCGGA TTGACGGGCT CATGCGCGAA CTGGAGACCG CGGTGGGCGA CTCACGACTT 
CTGGCGAAGG CACGGGCAGG GTTCGTCCCC TGGTACCGGG CCCTGTGCCT GCAGGCGTGG 
CAGGGATTCG CAGCCTCATT CCCCCGCGGC GCCGAGAGGC TTCGGGGCAG CGGCGAGTGG 
CAGCAGGCCG CTACCCGGAT GGCGACCGAG CACGGTCCGT ACTTCGCGTT CATCACCCGG 
ATGACCCAGG AGTTGCACAC CCTGGCGGGC ACGGAGGGAC TCCCTCCCTT TGCAGCACAG 
CTCTTCGCAT TCCAGATTGC GCGAACCGGG GGAGCCGTCT CGCACGATGC AGCAGCCAAC 
GTCACCGCCG AAAGCCGTCG CCTCATGGCC TCCATCCGCA GGAGGCTGGG AAACGAGGCT 
GCGGCCAGCA CCATCGATCC GACCTTCATG GCATCGCGCA GCTGGCAGGA ATACCAGGCA 
GCCCTGGCGG CCATCGCTCC AGCCGCATCA TCGCGGCAGC AGGCCTTCCA ACTGGCATCC 
CAGACCTTCA CCGATGATCC CGCCACGGGG AAAACCCCAT TCCATGCAGC CTGGAATGCG 
GCCGCACGGC TGAAGCGGGA TATCGCCGGC GCCGGTGCCG ACGACGCCTT CTGGCGCCTC 
GTCACCGGTC CCCTCGATTT TCTCTGGGGA TATGTCAGGC GCGAAGCCGG TTGCCAGCTC 
CAGACCCTCT GGGAGGAGCA GGTCCTCGCC CCCACCCTGG GCATGCCCCC CCAACAGGCG 
GGGCCAATGC TGCTGGGCGC CGATGGCCTT GCCTGGCGCT TCGTGAAGGG CCCGGCCGCC 
CCCTTTGTCC GGGGCACGGC AGCGGGGTAC GCCCCCCGGC AGGCACTGGG CGGAGCGCTG 
CCGCTGGAGG GATCCCTCTT CGCCTTTTTG GGCAAAGGGG CACAGCTCAA TGCCATGGCA 
TCCGGCCGGC AGTCGAACTA TACCGTAGCA ATCAAGGGAC TTCCCACCGA TGCGAACCCC 
GAGGCCCGGA TCAAGCCGCA CGGCACGCGA TTGGAGCTCC AGTGCGCCGG GCAAGCCCAG 
GCTCTCGCGA ACCACAACTT TCCTGCCGGC AAGACCTTTT ACTGGTCGCC CGACAGCTGC 
GGCGACGTGA TCTTCCAGAT TGAGGCGGGC GACCAGGTAC TCACAAAGCG ATATGCTGGA 
CCCCAGGCAT TCCCGGACTT TCTACGCGAG TTCGCCAGCG GGCATCGCAC GTTTGCGGCC 
GGAGAGTTTC CCGGCGAGAA AGATGCGCTG GCTCGCATGG GGATCACCTC AATCCGGGTA 
AGCTACCAGT TCACCGGCAG TCAGCAGGTG ATCAGGCAGG GCGGCGCCAT GGCCGGAGCC 
ACGGCTCCAC GGATGATCGC CCGGTGCTGG TAG 

 

Protein sequence

MMKSLKWLLL ASVVVLTVFL VAGIVLALDW PWWVTFCLLL LLAGIAAGAI LLRSLLLRRR 
ERHFVREVIE QEKDTLSTLS DGSRTHLDQL AQQWKEGVGA LRGSHLKRRG NPLYVLPWYL 
VIGESGSGKS TSLASARLPS PYTDSRRSAD DAGTRNCDWW FFEESVVLDT AGRYAVPVNG 
ERDRDEWQKL LALLVRHRRR EPLNGLVLTV AADRLLAGGR EENAEEGRTM RRRVDELMRA 
LGVRVPVYVL VTKCDLIEGM NCFAELLPEK ALRQPMGMIN RDLTANVGSF TARTMETVTE 
RLRSLRLQIL HRPEARDATP ALAFFPEEFA GLREGLTAFM EGTFRENPYQ ETPLLRGVFF 
ASGRQAGSPR SRFSGTLGTV AGPQPLPDTS RGIFLHDFFA RVLPADRALL TPTQRSVQWR 
TVTGNLGLLS WLLVGLALCG LLSFSFVKNM ATIREVSRQF ERTPPINADP VNNLLVLESL 
RQGILRVEEQ NRAWWVPRFG LNESRRVEAV LKDKFCNQFR DGFLAPYDRH LAEELNGLSA 
ATPDELFARY AIHLTRRINI LTASRAGRGL DELRALPQPA SLSFMAAETP SVADAHKRFG 
ELYLHYLAWR SDSPDLAREA AQLQGWLRRS LALKTDSLSW LAPWVDRHGG LSPVTLAEFW 
GGSVPAPDEP TITPSFTGKG KDRIDGLMRE LETAVGDSRL LAKARAGFVP WYRALCLQAW 
QGFAASFPRG AERLRGSGEW QQAATRMATE HGPYFAFITR MTQELHTLAG TEGLPPFAAQ 
LFAFQIARTG GAVSHDAAAN VTAESRRLMA SIRRRLGNEA AASTIDPTFM ASRSWQEYQA 
ALAAIAPAAS SRQQAFQLAS QTFTDDPATG KTPFHAAWNA AARLKRDIAG AGADDAFWRL 
VTGPLDFLWG YVRREAGCQL QTLWEEQVLA PTLGMPPQQA GPMLLGADGL AWRFVKGPAA 
PFVRGTAAGY APRQALGGAL PLEGSLFAFL GKGAQLNAMA SGRQSNYTVA IKGLPTDANP 
EARIKPHGTR LELQCAGQAQ ALANHNFPAG KTFYWSPDSC GDVIFQIEAG DQVLTKRYAG 
PQAFPDFLRE FASGHRTFAA GEFPGEKDAL ARMGITSIRV SYQFTGSQQV IRQGGAMAGA 
TAPRMIARCW