Gene GSU0890 details

Gene Information

• Locus tag: GSU0890
• Symbol: ligA
• ID: 2687161
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sulfurreducens PCA
• Kingdom: Bacteria
• Replicon accession: NC_002939
• Strand: -
• Start bp: 949753
• End bp: 951765
• Gene Length: 2013 bp
• Protein Length: 670 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 637125563
• Product: DNA ligase, NAD-dependent
• Protein accession: NP_951947
• Protein GI: 39995996
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACAAGC AGACCGCCGC GGACCGCGTT GCCGCACTCC GCACTGAACT TGAGCGCCAC 
AACCGCCTCT ACTACGCGGA AGACCGCCCC GAGATCACCG ACGCCGAATA CGATCTCCTC 
TTCCGCGAAC TGGTGGACCT GGAAACGCGG TTCCCCGACC TGGCCGCTCC CGACTCCCCA 
ACGCAACGGG TGGGCGGCGC GCCCCTGGAC AAGTTCGAGC AGGTCACCCA CCGCATCCCC 
ATGCTCTCCC TGGAAAACGC CTTTACGGAC GTCGAGATCG CTGACTTCGA CGACCGGGTC 
AAACGCTTCC TGGGGCTCCA CGGCGACGTG GAAATCGATT ACGTCTGCGA ACCCAAGATG 
GATGGGCTTG CCGTGGAACT GGTCTACGAG CGCGGCATCC TCACCGTCGG CTCCACCCGG 
GGCGACGGCG TGGTGGGGGA GAACGTCACC CACAACCTGA AGACCGTCCG GGGCATCCCC 
CTCCGACTCC GGTGCGAGCA GCCGCCGGAA TTGCTGGAGG TGCGGGGCGA GGTTTACCTC 
CCCCTGGCCG CGTTCCAGCG GCTGAACGCC CAGCGGGAGG AGGAGGGGGA GCCACCCTTT 
GCCAACCCCC GTAACGCCGC GGCCGGCTCC ATCCGCCAGC TGGACTCCCG GATCACGGCC 
CGGCGCCCCC TGGCCATCTT CTGCTACGCG CCGGGCGAGG TCCGGGGCGC CTCCTTCGCG 
GCACAGACTG AATTTCTCGA CCGGATCGGC GAATGGGGCC TGCCGGTCAA TCCCCTGATC 
CGGCCGGTCA AGGGAGTGGC GGAGATCCTC GCCTACTACC GGGAGATGAC CGAACGCCGC 
GACTCGCTCC CCTACGAGAT CGACGGCGTG GTGGTCAAGG TGGATTCCTT TGCCCTCCAG 
CGGGAGCTGG GAGAGAAGAG CCGCTCCCCC CGCTGGGCCG TGGCCGTCAA GTTCCCGCCC 
CGGCAGGCGG TGACCGTGGT GGAGGACATC GTCCCCTCAG TGGGGCGCAC CGGGGTGATC 
ACCCCCACGG CCAACCTCAG GCCCGTGGAG GTCTCCGGCG TCACCGTCTC CCGCGCCACC 
CTCCACAACT GGGAGGAGAT GGAGCGCAAG GACATCCGCA TCGGCGACAC CGTGGTGATC 
GAGCGGGCCG GCGACGTGAT CCCGGCCGTG GTCAAGGTCC TGACCGAAAA GCGTTCGGGC 
AGCGAACGCC CCCTTCCCAT CCCGGCCGTC TGCCCCGAGT GCGGCTCCGA GGTGGTGAAG 
ATCCCCGACG AGGTGGCGGT CCGCTGCATG GGGCTCTCCT GCCCGGCCCA GATCCGTGAA 
TCCATCATCC ACTTCGCCTC CCGCGACGCC ATGGACATGG AGGGGCTGGG CGAGAAATAC 
ATCGAACAGC TCCTGCGGCT GGGCCTGGTA AAGAACGTGG CCGACCTCTA CACCCTCACC 
AAAGACCAGT TCATGCAGTT CGACCGGATG GGGGACAAGC TGGCCGAAAA CCTCCTGAAC 
GCCATCGAGG CCAGCAAGCA ACGGGAGCTC TCCCGCTTCA TCTTCGCCCT GGGCATCCGC 
CACGTGGGGG AACACACGGC AAAACTCCTG GCCGGCGCCT TCGGCAGCAT CGAAAACCTG 
GAGCGGGCCA CCGAGGAGGA ACTCCTCTCC ATCCGCGAGG TGGGCCCCCA GGTTGCCCGG 
AGCATCATCA CCTTCTTCCG CAACGAGGGG AACCGGGAGA CCATCCGGCG GATGTTCAAG 
GCCGGGGTCC GGCCCACGGC GGAGGAGAAA AAGGTGGGGG GCCGCTTCAC CGGCAAGACC 
TTCGTCTTCA CCGGGGCGCT CACCCGCTTC AGCCGCCCTG AGGCCCAGAA GATGGTAGAG 
AAGGAGGGGG GCCACGCGGC CGGGTCCGTC TCGAAAAAGA CCGACTACGT GGTTGCCGGC 
GCCGAGGCCG GCAGCAAGCT GGACAAGGCC CGCCAGCTGG GAGTCAGGGT GCTGACCGAG 
GATGAATTCC TGGCAATGCT GGAGGAGGGA TAG 

 

Protein sequence

MDKQTAADRV AALRTELERH NRLYYAEDRP EITDAEYDLL FRELVDLETR FPDLAAPDSP 
TQRVGGAPLD KFEQVTHRIP MLSLENAFTD VEIADFDDRV KRFLGLHGDV EIDYVCEPKM 
DGLAVELVYE RGILTVGSTR GDGVVGENVT HNLKTVRGIP LRLRCEQPPE LLEVRGEVYL 
PLAAFQRLNA QREEEGEPPF ANPRNAAAGS IRQLDSRITA RRPLAIFCYA PGEVRGASFA 
AQTEFLDRIG EWGLPVNPLI RPVKGVAEIL AYYREMTERR DSLPYEIDGV VVKVDSFALQ 
RELGEKSRSP RWAVAVKFPP RQAVTVVEDI VPSVGRTGVI TPTANLRPVE VSGVTVSRAT 
LHNWEEMERK DIRIGDTVVI ERAGDVIPAV VKVLTEKRSG SERPLPIPAV CPECGSEVVK 
IPDEVAVRCM GLSCPAQIRE SIIHFASRDA MDMEGLGEKY IEQLLRLGLV KNVADLYTLT 
KDQFMQFDRM GDKLAENLLN AIEASKQREL SRFIFALGIR HVGEHTAKLL AGAFGSIENL 
ERATEEELLS IREVGPQVAR SIITFFRNEG NRETIRRMFK AGVRPTAEEK KVGGRFTGKT 
FVFTGALTRF SRPEAQKMVE KEGGHAAGSV SKKTDYVVAG AEAGSKLDKA RQLGVRVLTE 
DEFLAMLEEG