| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5233 |
|---|
| Symbol | |
|---|
| ID | 5673567 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 6283453 |
|---|
| End bp | 6285708 |
|---|
| Gene Length | 2256 bp |
|---|
| Protein Length | 751 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641244087 |
|---|
| Product | MMPL domain-containing protein |
|---|
| Protein accession | YP_001509497 |
|---|
| Protein GI | 158316989 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2409] Predicted drug exporters of the RND superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.812246 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGGGT TCCTGTACCG GGTGGGATGG CTGGCCGCCG GCCGGCCCTG GCGGGTGATC
AGCGCGTGGG TCGCCGCGCT CGTGGTGGCG ACCGCGCTCG CCATGGCCTG GGGCGGCGAG
CCCCACGACG ACTACGACGC CCCGGGCACC GCGTCGCAGC GGGGCACCGA CCTGCTCCGC
GCCGAGTTCC CGGTGCTCGC CGAGGCCCAG GCACGGGTCG TGCTGCACAC CGCCGACGGC
AGCCGGCTCG CCCCGAAGGT CATCACGGCC GTCTCCGCCC GGCTCGCAGA GGTGCCGGAC
GTCATCCTCG TCAGCCCGCC GCGGCCCTCC TCGGACGGCG ACACGGCGCT CATCAACGTG
CAGTACGACC GGCCGGTCAC CGACCTGGGC GGCACCGACG CGGTCGACGA CCTCGTCGAG
GCGACCAGGC CGGCCGCGGA CGCGGGCGTC ACCGTCGAGT TCGGCGGTCA GGTCGCCGAG
AACATCCAGG AGGTCAACGG CCGGGCCGAG GCGGTCGGTG TCGGCTTCGC CCTGGTCATC
CTGCTGGTCG CCTTCGGTTC GATCGTCGCG GCCGGGGTGC CGCTGGCGGT GGCGCTCATC
GGCCTGGGCA TCGGCAGCGC CGGCATCACC CTCATCGCGG CCGGCACCAA CGTCAGCACC
ATCGCGCCGA CACTCGCCTC GATGATCGGC ATCGGGGTCG GCATCGACTA CGCCCTCCTG
CTGATCACCC GGCACGTCGA GGGCCTGCGG GCCGGCCTGA CCGTCCGGGA GGCCGCCGCC
CGCGCCAACG GCACCGCCGG GGTGTCGGTG CTGTTCGCCG GGGTGACCGT CGTGCTCTCC
CTGATGGGGC TGCGGCTGGT CGGGCTGAAC ACCTACGTGA CCACCGGCTT CACCACCGCG
GCCGTGGTCG TCACCGTGGT CGTCACCGCG CTCACCCTCG TCCCCGCTCT GTGCGGGCTG
GCCGGGACGC GACTGCTGGG CCGCCGGGGC CGCGCCGCGC TCACGGCCGG CGTCGGGAAG
GCCAGCGTCG CGGCGGCCGG CTCCCCGGCC CGGCAGACGC TCACCGCAGC CTGGGCCGGC
CGGATCGGAC GCCGGCCCCT CCCGTGGGCA CTGGGTGCTC TCCTGCTCCT GCTGCTGCTC
GCGGCACCCG TCCTCGGGAT GCGCACCTGG CCGCAGGACG CCGGCAGTCA GCCGGAGTCC
ACCTACCAGC GGCGCGCCTA CGACCTGGTC GCCGCCGAGT ACGGCCCCGG CGCGAACGGC
CCGCTGATGC TCGCGGTGGA CCTGCGCAGA GTCCCCGCCG CCGATCTCCC CGCGCTCGTG
ACCCGTATCA GGGCGACGCC CGACGTCGCG GCTGTCGCCC CGCCGGTGAC CTCGCCGAGC
GGGAACGCCG CGGTGGTCTT CGTGACGCCC GCCGTCGCAC CGAGCGACAA GCGTGCCGCC
GACCTGGTCC GCCACCTGCG CGCCGACGTC CTGCCCCCGG GCATCGAGAT CACCGGTATG
ACCGCGGTCT TCACCGACCT GTCCGGTCTG CTGTCCGACC GGCTGTGGTG GGTGGTCGGC
TTCGTCGTCG GCGTGTCCCT GCTGCTACTG ACGGTCGTGT TCCGCTCACC AGTGGTCGCG
CTGAAGGCCG CGGTCATGAA CATGCTCTCG ATCGCCGCCG CCTACGGCGT GGTGACCGCC
GTGTTCCAGT GGGGCTGGGG CGCCGAGCTG CTCGGCCTGC CGCACAGCGT GCCGATGTCG
AGCTGGCTGC CCGTGCTGAT GTTCACCGTG CTGTTCGGGC TGAGCATGGA CTACGAGGTC
TTCCTGCTCT CCCGCATCCG GGAGGACTAC CTGGCCACCG GCGACCCGCA CGGCAGCGTC
GTGCGCGGCC TCGCCGCCAC CGGCCGGGTC ATCAGCTCCG CCGCCCTGAT CATGATCGCG
GTCTTCGCCG GCTTCGCCCT CGACCCGGAC GTCACGGTGA AGATGGTCGG CGTCGGGATG
GCCGTCGCCG TGCTGGTCGA CGCGACCATC ATCCGCATGA TCCTGGTGCC CGCCACCATG
GGCCTGCTCG GCCGCGCGAA CTGGTGGCTC CCGGGCTGGC TCGACCGCAT CCTGCCCCAC
GTGGACGTGC ACGGCACCGA GCCCGCCACC GCCACGGTCG CCCCGACCAC CGGGCCAGCC
ACCGGTCCGG CCGCCGACGC GGAATCGACC GACAGCGTGC CGCCGGCCCC GACCGGCGCG
GCACGGGACT CCGACCAACC GGCCGTCGTC AGCTGA
|
|---|
| Protein sequence | MSGFLYRVGW LAAGRPWRVI SAWVAALVVA TALAMAWGGE PHDDYDAPGT ASQRGTDLLR
AEFPVLAEAQ ARVVLHTADG SRLAPKVITA VSARLAEVPD VILVSPPRPS SDGDTALINV
QYDRPVTDLG GTDAVDDLVE ATRPAADAGV TVEFGGQVAE NIQEVNGRAE AVGVGFALVI
LLVAFGSIVA AGVPLAVALI GLGIGSAGIT LIAAGTNVST IAPTLASMIG IGVGIDYALL
LITRHVEGLR AGLTVREAAA RANGTAGVSV LFAGVTVVLS LMGLRLVGLN TYVTTGFTTA
AVVVTVVVTA LTLVPALCGL AGTRLLGRRG RAALTAGVGK ASVAAAGSPA RQTLTAAWAG
RIGRRPLPWA LGALLLLLLL AAPVLGMRTW PQDAGSQPES TYQRRAYDLV AAEYGPGANG
PLMLAVDLRR VPAADLPALV TRIRATPDVA AVAPPVTSPS GNAAVVFVTP AVAPSDKRAA
DLVRHLRADV LPPGIEITGM TAVFTDLSGL LSDRLWWVVG FVVGVSLLLL TVVFRSPVVA
LKAAVMNMLS IAAAYGVVTA VFQWGWGAEL LGLPHSVPMS SWLPVLMFTV LFGLSMDYEV
FLLSRIREDY LATGDPHGSV VRGLAATGRV ISSAALIMIA VFAGFALDPD VTVKMVGVGM
AVAVLVDATI IRMILVPATM GLLGRANWWL PGWLDRILPH VDVHGTEPAT ATVAPTTGPA
TGPAADAEST DSVPPAPTGA ARDSDQPAVV S
|
|---|
| |