| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5141 |
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| Symbol | secF |
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| ID | 5673475 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 6162057 |
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| End bp | 6163310 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641243991 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_001509405 |
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| Protein GI | 158316897 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.358124 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00205157 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGTTGA TAGGTCGGCT CTACCGCAGC GAGTTCAGCG TCGACTTCGT CGGCCGTCGC
CGTGTCTGGT ACATCGTGTC CGGCGTGCTG ATCACGATCT GTGCCCTCAG CATGATCTTC
CGGGGATTCT CCCTCGGTAT CGAGTTCTCC GGCGGCGCCG TCTTCCAGTT CCCGTCGAAC
GGCGGGACGG TCGAGCAGGT CGACAGCCTT CTGAGCAAGA ACGGGATCGA CGCGTCCGAC
AGCGTCGTCC AGCAGCTCGA GACGTCCCGC CAGTTCCGGG TGCAGACGCC CACGCTGACC
GACCAGCAGA CCGAGGCGCT GCAGAAGGAC TTCGCGACGC GCTTCAAGGT CACCAACCCG
GACGAGAACA TCGCCGTCTC GACCGTCGGG TCGTCCTGGG GATCGACGAT CACGAGCAAG
GCGATCCAGG GCCTGATCGT GTTCCTCGTC CTGGTGATGA TCTATCTGTC GATCCGGTTC
GAGTGGAAGA TGGCGGCTGC GGCGATGGCC GCGCTCATCC ATGACCTCAT CGTCACGATG
GGTGTCTACT CGCTCGTCGG CTTCGAGGTC ACCCCGTCCA CGGTCATCGC CGTCCTGACC
ATCCTCGGCT TCTCGCTGTA TGACACGGTG GTCGTCTTCG ACCGGGTCCG CGAGAACACG
GCGGGGATGG CGACGTCCTC GCGGCGCACC TACGCCGAGG CGACCAACGA CGCGCTCAAC
GAGACACTGG TCCGCTCGCT GAACACGTCC CTGATCGCGC TCATCCCGGT GGCCTCGCTG
CTGTTCGTCG GCGCCGGCCT GCTGGGCGCC GGCACGCTCA AGGACCTCGC CCTCGCCCAG
TTCGTCGGCA TCGCCTCGGG CACCTACTCC TCGCTGTTCT TCGCCACCCC GCTGCTGGTC
GACCTCAAGC GCGGTGAGCC GGCGGTGAAG GCACTCGACG CCCGGGTGCT GCGGGCGCGG
GCGAGCGCCG CCCGCGCGGC CAAGACGACC GAGCCCGGGG GTGGCGGCCG GCCGGCGGCG
CGCCGCGGCG TGGATCCGGA GACAGCCGTC CCACTGGCCG ACCCGGACTC AGACCGGCGC
GACGACGGCC GGGACCCGGC GGACACTGTC GGCATCGCCA CCGGGATGCG CGCGGCTCCG
GCCGGGGCCG CCAGCGGCGC GGCCGGGCGT GGTGGCATGC CATCGGCCCA GCGCCGCGCC
CCGAACCGCA AACCGTCCCA GCGCGGCCGC CCGAGCGGCA AGAAGCGACG CTAG
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| Protein sequence | MSLIGRLYRS EFSVDFVGRR RVWYIVSGVL ITICALSMIF RGFSLGIEFS GGAVFQFPSN
GGTVEQVDSL LSKNGIDASD SVVQQLETSR QFRVQTPTLT DQQTEALQKD FATRFKVTNP
DENIAVSTVG SSWGSTITSK AIQGLIVFLV LVMIYLSIRF EWKMAAAAMA ALIHDLIVTM
GVYSLVGFEV TPSTVIAVLT ILGFSLYDTV VVFDRVRENT AGMATSSRRT YAEATNDALN
ETLVRSLNTS LIALIPVASL LFVGAGLLGA GTLKDLALAQ FVGIASGTYS SLFFATPLLV
DLKRGEPAVK ALDARVLRAR ASAARAAKTT EPGGGGRPAA RRGVDPETAV PLADPDSDRR
DDGRDPADTV GIATGMRAAP AGAASGAAGR GGMPSAQRRA PNRKPSQRGR PSGKKRR
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