Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_0872 |
Symbol | |
ID | 5669286 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 1016766 |
End bp | 1018622 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 641239799 |
Product | N-succinyldiaminopimelate aminotransferase |
Protein accession | YP_001505234 |
Protein GI | 158312726 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
TIGRFAM ID | [TIGR03539] succinyldiaminopimelate transaminase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.726364 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.151599 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGGCTGC CCGACTTCCC ATGGGACCAC CTGGTCTCGT ACAAGGAGAA GGCGCGGTCG CATCCGTACG GGCTGGTGGA CCTGTCGGTG GGTACCCCGG TCGACGCGAC GCCGGCGGTG GTGCGCCACG CCCTCGCCGG TGCCGCGGAC TCCCCGGGGT ACCCGCTCAC CACAGGCACG CCCGATCTTC GTGAGGCGGC TGCCGGCTGG CTGGCCCGCC GGCTCGGTGT GCTGGTGGAG CCGTCCGCCG TGCTGCCGGT GCTGGGCACG AAGGAGCTGG TCGCCCAGCT TCCCTCGCAG CTCGGCCTGG AGCCCGGGGA CCGCGTCTGG GTGCCCACCC CGGCCTACCC GACCTACGAG GTCGGCGCCC TGCTCGCGCG CTGCGAGCCG GTCGTCGGCC CCGCCGAGGG TGTTGCCCTC GTCTGGCTGA ACTCGCCCGG CAACCCGACG GGGCGTGTCC TGTCGGTGGA CGAGATGCGC GCAGTGGTCA CCTGGGCGCG TGAGCGCGGC GTGATCGTCG CCAGCGACGA GTGCTACATC GAGCTGGGCT GGGAGGCCCG CGCGGTCTCG GTGCTCCACC CGGACGTCTG CGGCGGCTCC CACGAGGGCC TGCTCGCCGT CCACTCGTTG TCCAAGCGCT CGAACCTGGC CGGGTACCGG GCCGGGTTCG TCACCGGTGA CCCCGATCTC GTCGACGGGC TGCTCCAGCT CCGCAAGCAC GCGGGGCTGA TGATGCCGTC GCCGGTGCAG GCGGCGACGA CGGCCGCGCT CGCGGACGAC ATGCACGTCG CCGACCAGCG CGCCCGCTAC GCCAACCGGC GGGCGGTACT CGCCGCGGCG CTCGCCGTCG CGGGCTTCAC GATCGACCAC AGCGAGGCCG GTCTCTATTT GTGGGCCACC CGCGGCGAGG ACTGCTGGGC CACGGTGGAC GCGCTGTCCA GCGTGGGTGT CCTGGTCGCG CCGGGGAGCT TCTACGGCGA GTCCGGCCGG CGGCACGTGC GGGTCGCGCT GACCGCCCCG GACGCCCAGA TCGCCACCGT TCCGGAGCGC ATGACCATGC TCCCCGCGGC AGGCGCCCCG AGCGGCGCGC AGGCCGCGCC GGGCTGGGGC CAGCAGCCGG CCGGCTACCC GCCCGCCGGG CCGCCCGGCC CCGCGGCTTC GGGGCCGCAT CCGGTGGGTG CGGGCCGCGG CGGTGACCAG GGCTGGTCCT CCGGCCGTCC GTCCGGGTAC GGAGCGGGTG AGCCGGCGCG GGCCGACCAG AGCTCTGTCG GTTCGTTCGA CCGGTACCGG GCGAGCCAGC CCGATCCGGG CGCCCGGCCG TCCCAGGACT ACCGCCCCAC CCAGGACTTC GGCTCGGCCC AGGAATACCG CCAGCCTGAG GAATACCGGC AGTCCCAGGA CTTCCGGGGA GGCCGGGACA TCCGCTCGGG GCAGCCCGGA GATCCCTACC GGGACCCCCA GGGTGCCCAC GGCCGGTCGG GGTCGTACTC CGGCGCCGGT GAGGGCGCCG CCGGGCAGGG CACGCCACCG CCGTACCAGA CGGGTCAGCT GCCCGTCCCC TCGTATGAGA ACGGCGGCGG CAGCGCGCCG CAGCAGCAAC CGCCGCTGCC TTACCAGACC GGGCAGATGG CCGTGCCTCC GTACCAGACG GGCCAGCTGC CGGTGCCGCC GTATGAGACC GGCCAGCTGC CGGTGCCGCC GTATGAGACC GGCCAGCTGC CGGTGCCGCC GTATGAGACC GGCCAGCTGC CGGTCCCGCC GTACCAGACC GGGCAGATGG CCGTCCCGCG GCCCGGTGGT GGCGAGCAGG GAGACCGGAA CACGCCGGGC TGGGGCTCGG AGCCCGACGT CCGCTGA
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Protein sequence | MRLPDFPWDH LVSYKEKARS HPYGLVDLSV GTPVDATPAV VRHALAGAAD SPGYPLTTGT PDLREAAAGW LARRLGVLVE PSAVLPVLGT KELVAQLPSQ LGLEPGDRVW VPTPAYPTYE VGALLARCEP VVGPAEGVAL VWLNSPGNPT GRVLSVDEMR AVVTWARERG VIVASDECYI ELGWEARAVS VLHPDVCGGS HEGLLAVHSL SKRSNLAGYR AGFVTGDPDL VDGLLQLRKH AGLMMPSPVQ AATTAALADD MHVADQRARY ANRRAVLAAA LAVAGFTIDH SEAGLYLWAT RGEDCWATVD ALSSVGVLVA PGSFYGESGR RHVRVALTAP DAQIATVPER MTMLPAAGAP SGAQAAPGWG QQPAGYPPAG PPGPAASGPH PVGAGRGGDQ GWSSGRPSGY GAGEPARADQ SSVGSFDRYR ASQPDPGARP SQDYRPTQDF GSAQEYRQPE EYRQSQDFRG GRDIRSGQPG DPYRDPQGAH GRSGSYSGAG EGAAGQGTPP PYQTGQLPVP SYENGGGSAP QQQPPLPYQT GQMAVPPYQT GQLPVPPYET GQLPVPPYET GQLPVPPYET GQLPVPPYQT GQMAVPRPGG GEQGDRNTPG WGSEPDVR
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