Gene Francci3_3907 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_3907 
Symbol 
ID3906675 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand- 
Start bp4676181 
End bp4676804 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content74% 
IMG OID637881233 
ProductPadR family transcriptional regulator 
Protein accessionYP_482986 
Protein GI86742586 
COG category[K] Transcription 
COG ID[COG1695] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.222073 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGGAA TCGCGCTGAC GCCGGTGTCG TATCTGGTCC TGGGGGAGGT GGCGCGGCGT 
GGCAGCGCCA CTCCGTACGA GCTCAAGGTC GCGGTTGCCG GCTCGATCGG TAACTTCTGG 
TCGTTTCCGC ACGCCCAGCT CTACAAGGAG CCGCCCCGCC TTGCCGCGGC CGGACTCCTC 
TCGGAGGAAC GGGAGGAGTC CGGCCGCAGG CGGCGGATCT TTCGCCTGAC CGACGCCGGC 
CGGAGCAGGT TGGCCGCGTG GCTCACCGTC CCGGAGGCCG GGCGCACCGA GCTGCGCGAT 
CCCGGCCTGC TCAAGCTGGC ATTCGCCGAT CTGGGCCGGC CGGGTGATGT CAGCCGGCTC 
GCGCGGGCCC AGGCGGCGGC GCATCGCGCT CACCTGGAGG TGTACCGCTC CCTGATCGCG 
CTGCCCGCGG GCGCCCTGGC CTGGTCGCTG CGCCGGACCC TCGATCTCGG GCTCGGCTAC 
GAGGAGCTCG CGGTCGAGTT CTGGGAACGC CTCGCCGCCG AGCCGGGCGG GGTGGCGCGG 
CGGTCAGCGG GCGGTGCGGT GCCTGCCCCG GGCCCGCAGG TAGTCCCGGA TGACGTAGTT 
GCCGAGGGCG GCGGGATCGG GTGA
 
Protein sequence
MAGIALTPVS YLVLGEVARR GSATPYELKV AVAGSIGNFW SFPHAQLYKE PPRLAAAGLL 
SEEREESGRR RRIFRLTDAG RSRLAAWLTV PEAGRTELRD PGLLKLAFAD LGRPGDVSRL 
ARAQAAAHRA HLEVYRSLIA LPAGALAWSL RRTLDLGLGY EELAVEFWER LAAEPGGVAR 
RSAGGAVPAP GPQVVPDDVV AEGGGIG