| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2996 |
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| Symbol | |
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| ID | 3905493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 3548757 |
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| End bp | 3550145 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637880316 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_482082 |
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| Protein GI | 86741682 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.958202 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.49053 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGACC GGCCAGGTTC TCACCACCGG GATCCGGGGC ACCGGGATCC CGGTGCGGCG
GCCCAGTGGC GGACACGTGC CCCGGAGCTT GCCCCGCGCA AGGCCCGACG TCAGCGTCCC
ACGGATCGAG GAGTCGCCGC GATGTCCAAT ACCCGGTCGC GGCTGGGACG GCGTCCCATC
GCCATCACCG CCCTGGTGAT CCTGGCCGCC ATCGTCGGCG TCTTCATCGG CCGGGCCTTC
GGCGGAGACG GCCGTAGCCC GATGCTCGTG AGCACGCCCC CGAGCACGCC CTCAGCGCAG
ACGGCGGCAC CGGAACAGGC TCGGCGCGAT GCGGCGACGG AGGCGAAGGC GAACCTGCAC
GCGACCACGT GCACGACCGT ACGGATCATC GCCGGCCAGC CCCGCACCCC CTACTCGCAG
TACGCGAGCA CACTCGCGAA GCTCATCAGT GATCCGGCGC TGAACGGCGG CAACGGGTGG
CGCGCCTTTC CTGATTCGGA CACGAGCGGG ACGTCCCAGA ACCTCAAGAA TCTCGGGGTT
CCGGAGAACC GGCGCTGCAC TCTCGCGCTG GCCCAACTCA ACGTGGTGGT GGACGCCCAG
AACGGCCGGG GCGACTTCAC CGGCGGGGCC GTCGAGGGTC TGAGCCTCGT CGGCCAGATC
TATTACGACG TTCTCCAGCT CATCGTCCCG GCCGACTCCA GCATTCACAG CGCGGACGAT
CTGTGCGGCA AGACGGTCGA AAGCGGACTG CTCGACTCGG GCACCCACCA GATCGCCACC
GTGCTGTTCC GTCAGATCAC CCGGGTGAAG GGAGCGGGCT GCGTCGTCCG TCCGGTGACC
GGGAACCGGA TAACCGAGGC GCTCCAGAAA CTTCACTCCA CCGGCGCGGA TCACGCCGAC
GCGGTCCTGT GGGCGGCGGG CGCTCCCACG ATGGCGGTCC AGGAATATAA CGACAGCTAC
CAGAAGATCA AATTCGTGCC ACTCGACGAC TGGCAGTCGG CGATCCAGCG GGACTGGTAC
TCCCAGTACC TCGATGTCGG AGCCAACGTC TTCACAAGGG CCGCTATCGA GCCGGGTGAC
TACAACCTCA TCCCGTCCCA GCCGACAGCG ACCCTCGCGG TGCCGAACGG CATCGTCGCC
AGTAGGTACG CCGATCCCGC GCTGGTCGAG TTCGCCGCCT GGATGATGGA CGAGCACTCC
GCCGAGTTCA AGGCCACCCT GTGGGCCACT CATCAGGCGC AGGCGCAGGC GCGCCGCCTC
GGTTTCGCGA CTCCCGGCTC CTTCATCGCG ACCAACATCT GCCGGTACGT CCCGCTACAT
CCGGCGGCGG AGAGATACTA TACACATGCG CTCGGTTATC CGACGGGATG CCCGGCCCCG
ACCCCCTGA
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| Protein sequence | MRDRPGSHHR DPGHRDPGAA AQWRTRAPEL APRKARRQRP TDRGVAAMSN TRSRLGRRPI
AITALVILAA IVGVFIGRAF GGDGRSPMLV STPPSTPSAQ TAAPEQARRD AATEAKANLH
ATTCTTVRII AGQPRTPYSQ YASTLAKLIS DPALNGGNGW RAFPDSDTSG TSQNLKNLGV
PENRRCTLAL AQLNVVVDAQ NGRGDFTGGA VEGLSLVGQI YYDVLQLIVP ADSSIHSADD
LCGKTVESGL LDSGTHQIAT VLFRQITRVK GAGCVVRPVT GNRITEALQK LHSTGADHAD
AVLWAAGAPT MAVQEYNDSY QKIKFVPLDD WQSAIQRDWY SQYLDVGANV FTRAAIEPGD
YNLIPSQPTA TLAVPNGIVA SRYADPALVE FAAWMMDEHS AEFKATLWAT HQAQAQARRL
GFATPGSFIA TNICRYVPLH PAAERYYTHA LGYPTGCPAP TP
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