| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2598 |
|---|
| Symbol | |
|---|
| ID | 3906504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 3066448 |
|---|
| End bp | 3067665 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637879923 |
|---|
| Product | cation diffusion facilitator family transporter |
|---|
| Protein accession | YP_481689 |
|---|
| Protein GI | 86741289 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1230] Co/Zn/Cd efflux system component |
|---|
| TIGRFAM ID | [TIGR01297] cation diffusion facilitator family transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.238036 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCA CCGGCACCTT CGGTGACCAG GGCGCCGGCC ACGATGATCG TCGTGGCCGG
GATCACGGCC ACGGCCACGG TCACGGTCAC GGCCACAGCC ATGGTCATGG TCATGGTCAT
GGTGTTTCCG AGACGCCCGG GAGTGCCGGC CAACGGCGCC GGCTGCTGCT GGCGACCGCA
TTGAACATCG CCATCGTGAT CGGGCAGGCG GCGGCGGGGC TCGCGGTCGG TTCGGTCGGT
CTGCTCGCCG ACGCCGGGCA CAACCTGACC GACACTGCCG GCGTGGTGCT CGCGCTCGTC
GCGGTGGCAC TGTCCCGGCG GCCGCCGTCG GCGAGCCGCA CCTTCGGCGG GGTGCGTTGG
CCGGTGCTTG CCGCGCAGGC CAACGCCGCC GCCGTGCTGG TCGTGACGGC GCTGCTGGCG
GTGGAGTCCC TGCGGCGCCT CGGTTCGACC GGTTTCGTGG ATGGGGGAGT GGTGGTCGCC
GTCGCGTTGG CCGCCGCCGT TGTCAACGGG GTCAGCGCGT GGGTGGTCCA CGGCGGCGAT
GGTGATCTCA ACACCCGGGC CGCGGTGCTG CACCTCGCCG GGGACGCCGC GGTATCGTTG
GCGGTCGCCG CCGCCGGCGG GGCCATCTGG CTGGTCGGTG GCTGGTACTG GCTGGATCCG
CTGGTCTCGC TGGTGATCGC GCTGCTCATC GCCGTCCAGG GGGCGCGGCT GCTGGCGAGT
GCCTCACGGG TGCTGCTGGA GGCAACCCCG GCGAGCCTGG ACGTCGCGGC GGTGCGTGCC
GACATCCTGC GCGACCCTCA TGTCCTCGAC GTGCATGACC TGCACGTCTG GAGCCTGTCC
GACCGACTCC TCGCCGCGTC GGTGCATCTG GAGCTCGGCC ATCTCGACAG TGCCCACGGC
GACGGGGGCC ATCCCAGCCT GGCGCAGGCC CGATCGGTGT CCGATGCGAT CAAGGCGATG
CTCGCCGCGC GGCACGGCAT CACTCACGCG ACCATCGAGG CCGAGTGCGA GCCGTGTACC
CCGCCGCATG ACGACCCGTG CGGTGTCACC CGTGGGCTGG TCCGCCGCGA CGGGGACCGG
CAGACCGGGC GGCGGCGGCA CCCTCGGGAA CAGCGGCACC CTCGGGAACA GCGGCACCCT
CGGGAACAGC GGCACCCTCG GGAACAGCGG CACCCTCGGG AACAGCGGGG CCGGTCTTCC
CGCGACGTCG TGGTCTAG
|
|---|
| Protein sequence | MTSTGTFGDQ GAGHDDRRGR DHGHGHGHGH GHSHGHGHGH GVSETPGSAG QRRRLLLATA
LNIAIVIGQA AAGLAVGSVG LLADAGHNLT DTAGVVLALV AVALSRRPPS ASRTFGGVRW
PVLAAQANAA AVLVVTALLA VESLRRLGST GFVDGGVVVA VALAAAVVNG VSAWVVHGGD
GDLNTRAAVL HLAGDAAVSL AVAAAGGAIW LVGGWYWLDP LVSLVIALLI AVQGARLLAS
ASRVLLEATP ASLDVAAVRA DILRDPHVLD VHDLHVWSLS DRLLAASVHL ELGHLDSAHG
DGGHPSLAQA RSVSDAIKAM LAARHGITHA TIEAECEPCT PPHDDPCGVT RGLVRRDGDR
QTGRRRHPRE QRHPREQRHP REQRHPREQR HPREQRGRSS RDVVV
|
|---|
| |