Gene Francci3_1868 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_1868 
Symbol 
ID3906143 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp2203188 
End bp2203727 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content75% 
IMG OID637879206 
ProductIS630 family transposase 
Protein accessionYP_480973 
Protein GI86740573 
COG category[L] Replication, recombination and repair 
COG ID[COG3415] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.8029 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.202101 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGATATG CGACGGGTGG CGGGTTGACG CCCGCCGAGC AGGTGGAACG TGAGCGGGTC 
CGGAGGGCTG CGGCCGGCCG GTTCGCCGCG GGGGCGAGCC AGGCCGAGGT CGCCCGGGAG
TTCCGGGTGA CCCCGAAGAC CGCGAGCCGC TGGCACCACG CCTGGGAGGC CGAGGGCGAG
TCCGGGCTGC GCTCGGCCGG GCCGGGGTCG CGGTGCCGGT TGGATGACCG GGACCTGGCC
CGGTTGGAGG CGGTCCTGCG CCGGGGACCG GGGCCGTACG GCTGGGAGGA TCAGCGGTGG
ACCCTGGCCC GGGTCCGCCA GGTGATCGCA GCAGAGTTCG GGGTGGACTA CACCCTGGCC
GGGGTGTGGC TGCTGCTGGA CCGGCAGGGC TGGTCGTGCC AGCTCCCCGC CCGCCGCGCG
GTCGAACGCG ACGACGCCGC GGTCGACGCC TGGGCGCAGG AGGAGTGGCC GGCGGTAAAA
AGACCGCGGC GGCCCAGGAC GCCTGGATCT GTTTCCTCGA CGAGACAGGA CAGGGGCTGA
 
Protein sequence
MRYATGGGLT PAEQVERERV RRAAAGRFAA GASQAEVARE FRVTPKTASR WHHAWEAEGE 
SGLRSAGPGS RCRLDDRDLA RLEAVLRRGP GPYGWEDQRW TLARVRQVIA AEFGVDYTLA
GVWLLLDRQG WSCQLPARRA VERDDAAVDA WAQEEWPAVK RPRRPRTPGS VSSTRQDRG