| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1394 |
|---|
| Symbol | |
|---|
| ID | 5452106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | + |
|---|
| Start bp | 1504164 |
|---|
| End bp | 1504907 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640875169 |
|---|
| Product | CRISPR-associated Cas family protein |
|---|
| Protein accession | YP_001410897 |
|---|
| Protein GI | 154250072 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1583] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
|---|
| TIGRFAM ID | [TIGR01877] CRISPR-associated endoribonuclease Cas6 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGGTTAT ATATCAAATT CAGCTTCGAA CAGCTCGAAC TTCCAACCGA ATACAACAAC
ATTTTGCAAG GGTTCGTATA CAACATCATT AGTGAGGAGA AATACAGGAA ATTCCTTCAT
GACAAAGGCT ATCAACTCGG TAAACGAACT TACAAACTAT TTAGCTTCTC AAGATTGCTT
GGTAAATTCG AGCTTAATAA AGAAAATAAG ACCATCAAGT TTTTAAACGA AGCGAAGTTG
ATAATATCTT CTTATGATAC TTTACTTGCT GAGTTCATAA TTGAAAAAGT AGGAACATTT
GATAGCCTAA GAATAGGTCG TAATATTGTT CGACCAGAGA AAATCGAAAT CTTTGAATTT
CCACAAACCC AAAAAATCGT CGTATCAACA AAATCTCCAA TAACAGTTTA CTCGACGATC
GAAAAAGATG ACGGAAAGAA ATTCACAAAA TTTCATTCAC CAAACGAAGA TGATTTTATA
AGGATTCTTA AAGAAAACCT TTTAAGAAAA TACCAAACAA TACACGAAAC GCCGTTTAAA
GGAGAGCTTC ATATTGAAAA CATAGCGGAA AAACCAAAAA AAGTGATATT GCAGTACAAG
AACAGGAAGC TTGATGGATG GATAACCGTT CTAAAGCTCG AAGGGGATTA CGAGATACTA
AAAATAGCCT ACGACACAGG ATTAGGTTCC AAAAACTCTG CAGGATTTGG TTGCATCGAA
CTGGTAGACA AAGTACTGAC TTAA
|
|---|
| Protein sequence | MRLYIKFSFE QLELPTEYNN ILQGFVYNII SEEKYRKFLH DKGYQLGKRT YKLFSFSRLL
GKFELNKENK TIKFLNEAKL IISSYDTLLA EFIIEKVGTF DSLRIGRNIV RPEKIEIFEF
PQTQKIVVST KSPITVYSTI EKDDGKKFTK FHSPNEDDFI RILKENLLRK YQTIHETPFK
GELHIENIAE KPKKVILQYK NRKLDGWITV LKLEGDYEIL KIAYDTGLGS KNSAGFGCIE
LVDKVLT
|
|---|
| |