Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fnod_1089 |
Symbol | |
ID | 5451934 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Fervidobacterium nodosum Rt17-B1 |
Kingdom | Bacteria |
Replicon accession | NC_009718 |
Strand | + |
Start bp | 1188656 |
End bp | 1189372 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 640874857 |
Product | lytic transglycosylase catalytic |
Protein accession | YP_001410594 |
Protein GI | 154249769 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCTTAATA ATGCCAAAAA GCTTAGCAAA TTAATCTTAG TTCTGTCTTT TATTTTAATA CTAAGCTCTA TAGCGCTTTG TGAAACACCT AAATGGTTTT TGGAAGTGGT TACTAAAAGA AGAGCAAACG TGAAGGAAAA AACAACAGAA GAATTCATTA ACGATTTATG GAATACTATT TCAGATATAA GTGAAAAATA CAACATTGAT CCTGTATTTA TAAGCACTGT AATAGCCATA GAAAGTAACT TTACAAATGC TAAAGGTCCC GGTGGGGTAC TTGGGATGAT GCAGATTTTG CCGTCAACTG CACAAGGTAT AGCTAGATTA CTTAAACTGG AAGTTCCAAA AGATGGTTGG AATGCTTTGC TCACTGATTA TAAATTGAAT ATAACTTACG GAACAGCATA TTTGTCTTAC CTTTATAAAA AAACAGGCTC GCTCTCAAAA GCCCTTGAAG AATATAACAA TGGTAAAAAT AAGCAAAAAT ATGCTGCCAC AATAATGCAA CAGTACGAAT ATTATAAAAG TTTACACGAA AAAGAGCTTA AAGAAAAAGC TCAAATAAAC ATAAATACAT TCATCGAAAC TTCGGAAAGT TCATCAACAC AACAAGCAAC TCAAGAAACA CAAGAAACAA CTCAAGAAAC TCAAACAACA AATTCAACTA TAACTGAAAA CTCAACCGAT ACATCAGCAA CAAAAAGTGA AAATTGA
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Protein sequence | MLNNAKKLSK LILVLSFILI LSSIALCETP KWFLEVVTKR RANVKEKTTE EFINDLWNTI SDISEKYNID PVFISTVIAI ESNFTNAKGP GGVLGMMQIL PSTAQGIARL LKLEVPKDGW NALLTDYKLN ITYGTAYLSY LYKKTGSLSK ALEEYNNGKN KQKYAATIMQ QYEYYKSLHE KELKEKAQIN INTFIETSES SSTQQATQET QETTQETQTT NSTITENSTD TSATKSEN
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