Gene Fjoh_5004 details

Gene Information

• Locus tag: Fjoh_5004
• Symbol: secA
• ID: 5094274
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Flavobacterium johnsoniae UW101
• Kingdom: Bacteria
• Replicon accession: NC_009441
• Strand: +
• Start bp: 6040265
• End bp: 6043609
• Gene Length: 3345 bp
• Protein Length: 1114 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 644744429
• Product: preprotein translocase subunit SecA
• Protein accession: YP_001197322
• Protein GI: 146302731
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase)
• TIGRFAM ID: [TIGR00963] preprotein translocase, SecA subunit

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTTTCA TAAACAGCAT CATTAAGGTA TTTGTGGGTG ATAAGTCTCA AAAAGACGTT 
AAAGCCCTGC AGCCTTACCT AAACAAAATT AAAACTTTCG AATCGAGCTT AATGAGTTTG 
TCTCACGACG AATTAAGAGC AAGAACAACA TACTTTAAAG AAAGAATTAA AGAAGCAAGA 
GCAGATAAAG ATGCTAAGAT TGCTTCTCTT AAAGCCGAAG TTGAAAAAAT TGAAGATATC 
GACAAAAGAG AAGATATTTA TGATGCGATA GATGCTCTTG AAAAAGAAGC TTATGAAATC 
TCTGAAAAAA CTTTATTGGA AATTCTTCCG GAAGCGTTTT CTGTAGTAAA AGAAACGGCT 
CGTCGTTTCA AAGAAAACGC TCATATCGAA GTTACGGCTA CTGCAAAAGA CCGTGAGTTT 
TCTGCAACAA AACCATATAT CGTTATTGAC GGAGAAAAAT CTATTTGGGC AAACAAATGG 
AATGCTGCCG GAAAAGACAT CACTTGGGAC ATGATTCACT ACGATGTTCA GTTAATTGGT 
GGTATGGTAC TGCACGAAGG TAAAGTTGCC GAAATGCAAA CGGGAGAAGG TAAAACTTTA 
GTTGCTACAC TTCCTCTTTA CTTAAATGCC TTAACTGGAA ACGGAGTTCA CTTAGTAACA 
GTGAATGACT ACTTAGCAAA ACGTGACAGC ACGTGGAAAG CACCTTTATT CGAATTCCAC 
GGTTTATCTG TTGATTGTAT TGATAATCAC CAGCCAAGTA CTGAGGCTAG AAAAAAAGCT 
TACGACGCAG ATATCACTTA CGGAACCAAC AACGAATTTG GTTTTGACTA CCTAAGAGAT 
AACATGGCAC ACTCTCCTAG CGATTTAGTG CAGAGAAAAC ACAATTTTGC CATTGTCGAC 
GAGGTCGATT CTGTATTAAT TGATGATGCC AGAACACCGC TTATCATTTC TGGACCAGTT 
CCTCAAGGAG ATCGTCACGA ATTCAACGAA TTGAAACCAA AAATTGAAAA CTTAGTTGCA 
CAGCAGCGTC AGTTAGCAAA TGGTTTCTTA GCCGAAGCTA AAAAATTAAT CAAAGAAGGA 
AATACTAAAG AAGGTGGTTT CTTATTATTA AGAGCTTACA GATCTTTACC TAAAAATAAA 
GCATTAATTA AATTTTTAAG TGAAGAAGGA ATTAAACAAT TACTTCAAAA AACTGAAAAT 
CAATATATGC AGGACAACAA TCGCGAAATG CATAAAGTTG ACGAAGCTTT ATACTTTGTG 
ATTGAAGAGA AAAACAATCA GGTAGAATTG ACAGACAATG GTATTAAATA CCTTTCTGGA 
GATACTGATG CCGATTTCTT CGTTTTACCA GACATTGGAA CAGAAATCGC TGCGATTGAA 
AAACAAAAAT TAGACAAAGA CGCTGAAGCG GAAGCTAAAG AAAGATTATT CCAAGATTTT 
GGAGTAAAAA GCGAGCGTAT CCACACTCTT ACTCAACTTT TAAAAGCGTA TGCTTTATTC 
GAAAAAGACG TAGAGTATGT TATCATGGAC AACAAAATTA TGATTGTCGA TGAGCAGACA 
GGTCGTATCA TGGATGGACG TCGTTACTCA GACGGTCTTC ACCAAGCGAT CGAAGCTAAA 
GAAAATGTAA AAATCGAAGC TGCAACGCAG ACTTTTGCTA CTGTAACATT ACAGAACTAC 
TTTAGAATGT ACAACAAACT GGCTGGTATG ACGGGTACAG CGGTTACTGA AGCAGGAGAG 
TTATGGCAGA TTTACAAATT AGATGTTGTT GAAATTCCGA CAAACCGCGG CATTGCAAGA 
ATTGATAAAG AAGATTACAT CTACAAAACA ACACGTGAAA AATTCAACGC AGTTATCGAA 
GATGTTACTG AATTATCGCA AGCTGGAAGA CCTGTATTGA TTGGAACAAC TTCTGTAGAG 
ATTTCAGAAT TATTAAGCCG TATGCTTAAA ATGAGAGGAA TCACACACAA CGTATTGAAT 
GCTAAAATGC ATAAGCAAGA AGCACAAATC GTTGAAGAAG CTGGTAAAGC CGGAGTTGTA 
ACAATTGCAA CAAACATGGC TGGTCGTGGT ACCGATATTA AATTATCTCC AGAAGTAAAA 
GCTGCGGGAG GTTTAGCAAT CGTGGGTACA GAGCGTCATG ATTCTCGTCG TGTAGACAGA 
CAGTTACGTG GTCGTTCTGG TCGTCAGGGA GATCCGGGAA GTTCTCAATT CTACGTTTCT 
CTTGAAGATA ACTTAATGCG TTTATTCGGT TCTGAAAGAG TTGCGAAAGT AATGGACAGA 
ATGGGATTAA AAGAAGGTGA AGTTATTCAG CATTCTATGA TGACTAAATC TATCGAACGT 
GCTCAGAAAA AAGTAGAAGA AAATAACTTT GGTGTTCGTA AACGTTTATT AGAATATGAT 
GACGTAATGA ACTCTCAGCG TGAAGTAGTT TACAAACGTC GTCGTCATGC ATTGTTTGGA 
GAGCGTTTAA AACTGGATAT TGCGAATATG CTTTATGATA CTTGCGAATT AATCGTAAGC 
AACAGTAAAG TAACAAATGA TTTCAAAGGA TATGAGTTTG ATTTAATTCG TTATTTCGGA 
ATCACATCTC CAATTTCAGA AGCTGATTTC ATAAAATTAA ATGACATCGA AATTACTGGA 
AAAGTATACA AAGAAGCTTT AGCTTTCTAC ACTGAAAAAA CAGAAAGAAG CGCAAGAGAA 
GCTTTCCCAA TTATCAAAGG AGTTTACGAA GAGCCAAACA ATCATTTTGA AAGAATTGTA 
GTTCCATTTA CAGACGGAAT CAAAACTTTG AATGTGGTTA CAGATTTGAA AAAAGCTTAT 
GACAGCGAAG GTGCTCAATT AATCGCTGAT TTTGAGAAAA ACATCACACT TTCTATTGTT 
GATGAAGCTT GGAAAAAACA CTTACGCAAA ATGGACGAAT TGAAACAATC TGTTCAATTA 
GCCGTTCACG AGCAAAAAGA TCCATTGCTT ATTTACAAAT TAGAAGCTTT CAACTTGTTT 
AGAGGAATGC TTGACAACGT TAACAAAGAA GTTATTTCAT TCTTATTCAA AGGTGATTTA 
CCTGCTCAAA ACGTTCCTGA AATTCACGAA GCAAGAGAAG TAGCTCGTCC AAAAGAAAAT 
TTACAATTAA GTAAAGACGA AATACCAAAC AGCGAAAGTA TTAATCGTGA AGCTGGAGAA 
ACACAACAGC GTCAGGTTAC AGAAACTATC GTTAGAGATA TGCCAAAAAT CAACAGAAAT 
GATACTGTTA CAGTTCAGGA AGTTGCAACT GGTAAAACAG AAACAATGAA ATTTAAAAAA 
GCTGAAAGCC TTATCGCTGC AGGAACTTGG GTTCTTGTTA AATAA 

 

Protein sequence

MSFINSIIKV FVGDKSQKDV KALQPYLNKI KTFESSLMSL SHDELRARTT YFKERIKEAR 
ADKDAKIASL KAEVEKIEDI DKREDIYDAI DALEKEAYEI SEKTLLEILP EAFSVVKETA 
RRFKENAHIE VTATAKDREF SATKPYIVID GEKSIWANKW NAAGKDITWD MIHYDVQLIG 
GMVLHEGKVA EMQTGEGKTL VATLPLYLNA LTGNGVHLVT VNDYLAKRDS TWKAPLFEFH 
GLSVDCIDNH QPSTEARKKA YDADITYGTN NEFGFDYLRD NMAHSPSDLV QRKHNFAIVD 
EVDSVLIDDA RTPLIISGPV PQGDRHEFNE LKPKIENLVA QQRQLANGFL AEAKKLIKEG 
NTKEGGFLLL RAYRSLPKNK ALIKFLSEEG IKQLLQKTEN QYMQDNNREM HKVDEALYFV 
IEEKNNQVEL TDNGIKYLSG DTDADFFVLP DIGTEIAAIE KQKLDKDAEA EAKERLFQDF 
GVKSERIHTL TQLLKAYALF EKDVEYVIMD NKIMIVDEQT GRIMDGRRYS DGLHQAIEAK 
ENVKIEAATQ TFATVTLQNY FRMYNKLAGM TGTAVTEAGE LWQIYKLDVV EIPTNRGIAR 
IDKEDYIYKT TREKFNAVIE DVTELSQAGR PVLIGTTSVE ISELLSRMLK MRGITHNVLN 
AKMHKQEAQI VEEAGKAGVV TIATNMAGRG TDIKLSPEVK AAGGLAIVGT ERHDSRRVDR 
QLRGRSGRQG DPGSSQFYVS LEDNLMRLFG SERVAKVMDR MGLKEGEVIQ HSMMTKSIER 
AQKKVEENNF GVRKRLLEYD DVMNSQREVV YKRRRHALFG ERLKLDIANM LYDTCELIVS 
NSKVTNDFKG YEFDLIRYFG ITSPISEADF IKLNDIEITG KVYKEALAFY TEKTERSARE 
AFPIIKGVYE EPNNHFERIV VPFTDGIKTL NVVTDLKKAY DSEGAQLIAD FEKNITLSIV 
DEAWKKHLRK MDELKQSVQL AVHEQKDPLL IYKLEAFNLF RGMLDNVNKE VISFLFKGDL 
PAQNVPEIHE AREVARPKEN LQLSKDEIPN SESINREAGE TQQRQVTETI VRDMPKINRN 
DTVTVQEVAT GKTETMKFKK AESLIAAGTW VLVK