| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_4194 |
|---|
| Symbol | |
|---|
| ID | 5093824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 5039044 |
|---|
| End bp | 5042046 |
|---|
| Gene Length | 3003 bp |
|---|
| Protein Length | 1000 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 644743613 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001196521 |
|---|
| Protein GI | 146301930 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.173861 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGTACAG ACCGAAAAAT CAAATCGTTT AAATGGTGTT TACTGGTATC TTTTTTACTG
GTAAATATTG TGATGCACGC ACAGGAACGA AAAGTGACTG GAAAAATCAC TTCGAGCGAA
GATTTGCTTG GACTTCCTGG TGCTAATGTC TATATTAAAA ATTCGTCTGT TGGAGCAACA
GCTGATATGG ATGGAAATTA CACTGTAATT GTAGGAGAAA AAAATGCTGT TTTAGTTTTC
AATTTTGTCG GGTTTCAAAC TGTAGAAATT CCGGTTGGAA CCAAAAGTAT TATCAATGTA
AGTTTAAAAC CAGATACAAA AGCACTTGAT GAAGTTATTG TAGTAGGTTA CGGAACCCGT
AAAAAAAGTG ACATTACAGG ATCTATATCT TCTGTAACGG CAAAAGAACT AACCTCTTTT
CCTGTTTTAA ATGCAGAACA GGCTTTACAA GGCCGTGCGG CGGGTGTTTC TGTAATGACC
AATAACGGCG GTGAACCGGG CGCTCCTGTA AAAATAAGGG TTCGCGGGGG AACTTCTATC
AATGCAAGCG GTGATGCGCT TGTTGTGGTT GATGGTTTTG CAGGTGTTTC TATGCCGGCT
CCGCAGGATA TTGCTTCGAT TGAAGTTTTA AAAGATGCTT CGGCGACTGC AATTTACGGT
TCAAGAGGTT CAAACGGGGT TATTATGGTA ACTACCAAAA AAGGAAAAGT TGGAAAACCA
GTAATTGAAT TCAGTAATTC GACTTCAGTA CAATCTGTAA ATAACAAACT GCATTTATTA
AATGCCGATC AGTTTGCAGC TTACCGTAAA AGTTTTACAA CGCATACACA AGGTCCGGCA
AATACAGACT GGCAGGATGT AATTTATCGC GACGGAATGA TTTCGAATAC GCAGCTGTCT
TTTTCAGGCG GATCTGAAAA TGTGAGATAT TATGTATCTG GAACTTATTT TAATCAAAAC
GGAGTTGTAA TCAATTCTGG AATTGACAGA TATACCATTG TAAGTAATCT TGAGGCCGAT
TTGTCTCCTA AATTAAAAGT GGGTTTAAAT ACTTTTACCA GCAAACAGAA CAAAGAAGGA
ATCATAAGCC AGACTGGTGC CGGAGGAACA GGAGCTGCGG GTGTAATTGC GGCAGCCTAT
CGTTTTATGC CGGATAAAGG AATTTATAAT GAAGACGGTA CTTATACCAC AACCGCTCCA
ATTGGAGATG ATATTGACAA TCCGTATGCA ACAGCTATGG AAAATATTCT GGAAACTGTT
TCTATTGTAA ACCGAAATAA TTTCTTTGCG CAGTATCAAA TTACAAAAGA CCTTGACTTT
AAAACAACAT TAGGTCTAAC CGATAATAAC TCGCAGACCG GAAGATTTAT TCCGTCTACT
TTAATTGCCG GAAAAAATAT CAAAGGAGAA GCTTCTGTAA ACAATACCAG ATTTTCTTCT
TTCCTTACAG AAAATTATCT GACTTTTAAA CGTGAAGTGA TCTCAAAAGG TATGTTAACA
GTTTTGGCCG GATATTCATA CCAAAAAAAC AAAAACGAAA ATTCGTATGC CGCTTCCAGA
GGATTTTTAA CCAATACCAA TTCGTATAGA AATCTGGGTG CCGGAACTGT TTTCTTAAAA
CCAGATTCAG GTTTATCTGA AACAGAATTA ATTTCTGCTT TTGGAAGGTT AAACTTTGAT
TACGACGATA AATATCTGTT TACGTTTACT GCCAGACGAG ATGGTTCTTC AAGCTTTAGC
CAAAACTACA AATACGGAAC TTTCCCTTCT GGAGCTGTTG GATGGAATAT TGGTAAAGAA
AATTTCTTAA AAGACAGTAA AACGGTTTCA AACCTTAAGT TAAGAGCTAG CTATGGAGCA
ACAGGAAATC CTTCAATTGG CGCCTACTCT ACTCTTTCCA GATTTTCTGA AATTTATTAT
GTAAGCGGTG ACGTGATTAC AAATGCTGTG CAGTTAACTT CACTTGATAA TCCAAACTTA
AAATGGGAAA CCTCGTATCA GCAGGATTAT GGTATTGATT TAGGTTTATT TGATAACAGA
ATCAGCATTA CTGCCGATTA TTATAAAACG ATTACTAAAG ATTTATTGTT TAACAGACCT
CTTCCGGGAG TTTCAGGAAT TGCTTCTCAG CTTCAAAACG TGGGCGAATT AGAAAATAAA
GGATGGGAAT TGGGTATCAC TTCCAGAAAC TTTACGGGTC CTGATTTTAC ATGGTCGACA
AACTTTAATA TTTCTTCAAA CAAAAACAAA GTATTAAAAT TAGCAGATAA CAAAGATCTT
TTAATCAATT CTGCTCCGGG TCATTTCTTA GCAACTGAAT CTCAGATTTT AAGAGTTGGA
CAGCCAGTTG GATCTTTCTT CGGATTTATT TATGATGGCG TAATCCAGCA GGGAGAAACG
GTTTTACCAG GAAACTTTGA AACTGCTCCG GGAGGTGAAA AATTCAGAGA TGTAAACGGC
GACGGAAAAC TGGATTCTCA GGATAAAACA ATTATCGGAA ATCCAAATCC TGATTTCATT
TTTGGTTTCA ACAATGATTT TACCTATAAA AATCTGGATC TGAATATTTT CTTTCAGGGT
TCACAAGGAA ATCAAATCCT GAACTATACT TTAATGGAAC TGGCTTCTGG AAACAATAAT
GCTACAACTG AGGTTTTAGA TGCCTGGACG CCTACTAATA CGGATACAAA TGTTCCGGCA
AACGCAGCAA GAACGAAAAG AATCACTTCA AGATTTGTTT ATGATGGAAG TTACATCCGC
TTGAAAAATG TTTCTTTAGG ATATAGTTTA GATGAAAAAG TGGTTTCGAA ATTAGGATTA
AGCAAAGTTC GTTTCTACAT CAGTGCGCAA AACCTTTGGA CAATTACCAA TTATCCGGGT
TCAGATCCTG AAACGAATTA CCTAAACGAT ACCAACTCAA GAAGTAATAC CAATTTAGGA
TTGGATTATG GAGGATATCC AAACGTAAGA ACATTTACAG CAGGATTCAA TTTAAAATTT
TAA
|
|---|
| Protein sequence | MCTDRKIKSF KWCLLVSFLL VNIVMHAQER KVTGKITSSE DLLGLPGANV YIKNSSVGAT
ADMDGNYTVI VGEKNAVLVF NFVGFQTVEI PVGTKSIINV SLKPDTKALD EVIVVGYGTR
KKSDITGSIS SVTAKELTSF PVLNAEQALQ GRAAGVSVMT NNGGEPGAPV KIRVRGGTSI
NASGDALVVV DGFAGVSMPA PQDIASIEVL KDASATAIYG SRGSNGVIMV TTKKGKVGKP
VIEFSNSTSV QSVNNKLHLL NADQFAAYRK SFTTHTQGPA NTDWQDVIYR DGMISNTQLS
FSGGSENVRY YVSGTYFNQN GVVINSGIDR YTIVSNLEAD LSPKLKVGLN TFTSKQNKEG
IISQTGAGGT GAAGVIAAAY RFMPDKGIYN EDGTYTTTAP IGDDIDNPYA TAMENILETV
SIVNRNNFFA QYQITKDLDF KTTLGLTDNN SQTGRFIPST LIAGKNIKGE ASVNNTRFSS
FLTENYLTFK REVISKGMLT VLAGYSYQKN KNENSYAASR GFLTNTNSYR NLGAGTVFLK
PDSGLSETEL ISAFGRLNFD YDDKYLFTFT ARRDGSSSFS QNYKYGTFPS GAVGWNIGKE
NFLKDSKTVS NLKLRASYGA TGNPSIGAYS TLSRFSEIYY VSGDVITNAV QLTSLDNPNL
KWETSYQQDY GIDLGLFDNR ISITADYYKT ITKDLLFNRP LPGVSGIASQ LQNVGELENK
GWELGITSRN FTGPDFTWST NFNISSNKNK VLKLADNKDL LINSAPGHFL ATESQILRVG
QPVGSFFGFI YDGVIQQGET VLPGNFETAP GGEKFRDVNG DGKLDSQDKT IIGNPNPDFI
FGFNNDFTYK NLDLNIFFQG SQGNQILNYT LMELASGNNN ATTEVLDAWT PTNTDTNVPA
NAARTKRITS RFVYDGSYIR LKNVSLGYSL DEKVVSKLGL SKVRFYISAQ NLWTITNYPG
SDPETNYLND TNSRSNTNLG LDYGGYPNVR TFTAGFNLKF
|
|---|
| |