| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_1919 |
|---|
| Symbol | lysS |
|---|
| ID | 5090446 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 2217648 |
|---|
| End bp | 2219351 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 644741336 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_001194270 |
|---|
| Protein GI | 146299679 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTAT CAGAACAAGA AATCATCAGA AGAGAAAAAC TTCAAAACTT ACGCAATCTG
GGAATCAATC CTTATCCAGC TAATCTTTTT CCTGTAAATC ATACTTCGAA GCAGATAAAG
GAAACTTTTG AGGAAGGTAA GAAGGTTATC GTTGCGGGAC GTTTGATGAG TGTTCGTGAT
CAGGGTAAAG CTTGTTTTGC TGAATTACAA GACAGCGAAG GACGTATTCA ATTGTACGTA
AACCGTGATG TTTTATGCGA AGGCGATGAT AAAACTTTAT ACAACCAAGT ATTCAAAAAA
TTAACCGATT TAGGAGATTT TATTGGTATT GAAGGTGAAT TGTTTACTAC ACAAGTTGGA
GCAAAATGTA TTCGTGTAAC CGGCTTTACT TTCTTAAGCA AAACATTACG TCCGTTACCT
TTACCAAAAG TTGACGAAGA CGGAAATGTA CACGATGCTT TCAACGATGC TGAATTGCGT
TATAGAATGC GTTATGTAGA TTTAACTGTA AATCCGCAGG TAAAAGAAAC GTTTATTAAA
CGTACAAAGT TATTTACTGC AATGCGTGGT TATTTTAACG ATGCTGGATA TCTTGAAGTT
GATACTCCGG TTTTACAGTC AATTCCTGGT GGAGCTTCGG CAAGACCATT TATTACGCAC
CATAACTCAC TTGATATTCC GCTTTACATG CGTATTGCGA ATGAGTTGTA TTTAAAAAGA
TTAATTGTTG GTGGATTCGA AGGTGTTTAT GAGTTCTCTA GAAACTTCCG TAACGAAGGT
ATGGACAGAA CGCATAATCC TGAGTTTACT GCAATGGAAA TATATGTAGC TTATAAAGAC
TACAACTGGA TGATGGAATT TGCTGAAGGT TTACTAGAGC ATTGTGCAAT TGCTGTTAAC
GGAACTAGCG AAGTTACTTT TGGCGAGCAC AAAATCAACT TTAAAGCGCC TTATGCACGT
GTTACAATGA CAGACTCTAT CAAGCATTTT ACTGGTTTCG ACATTTCTGG AAAAACAGAA
CAAGAATTGT TTGAAGCGGC TAGAGGAATG GGAATCGAGG TTGACGAAAC AATGGGTAAA
GGAAAATTAA TTGATGAGAT TTTTGGAGCT AAATGTGAAG GAAATTATAT TCAGCCAACT
TTCATTACAG ATTATCCAAA AGAAATGTCT CCGCTTTGTA AAGAACACAG AGATAATCCA
GATTTGACTG AGCGTTTTGA ATTAATGGTT TGCGGTAAAG AAATTGCAAA TGCATATTCT
GAATTAAATG ACCCAATCGA TCAAAGAGAG CGTTTTGAAG ACCAAATGCG TCTTTCTGAA
AAAGGTGATG ACGAAGCAAA CGGAATTATC GACGAAGATT TCTTAAGAGC ACTTGAGTAC
GGTATGCCTC CAACATCTGG AATGGGAATT GGAATGGATC GTTTAATTAT GTATTTAACA
AACAATGCTT CTATTCAGGA AGTTTTATTG TTCCCTCAAA TGCGTCCTGA GAAAAAACAA
GCTCAGATTG AACTTTCTGA TGAAGAAAAA TTTATCATTG ACCTGCTTAC GAAAAATGAA
AATAGAATGG ATTTAACGCA GCTAAAAATT ACAGCTAACT TAAGCGGTAA AAAATGGGAT
GCGTCTATGA AAAACTTATC TAAACACGGT TTAACTAAAG TTGTTGTTGA CGGAGAGTTT
AAATTTGTGG AACTAGTTGG TTAA
|
|---|
| Protein sequence | MALSEQEIIR REKLQNLRNL GINPYPANLF PVNHTSKQIK ETFEEGKKVI VAGRLMSVRD
QGKACFAELQ DSEGRIQLYV NRDVLCEGDD KTLYNQVFKK LTDLGDFIGI EGELFTTQVG
AKCIRVTGFT FLSKTLRPLP LPKVDEDGNV HDAFNDAELR YRMRYVDLTV NPQVKETFIK
RTKLFTAMRG YFNDAGYLEV DTPVLQSIPG GASARPFITH HNSLDIPLYM RIANELYLKR
LIVGGFEGVY EFSRNFRNEG MDRTHNPEFT AMEIYVAYKD YNWMMEFAEG LLEHCAIAVN
GTSEVTFGEH KINFKAPYAR VTMTDSIKHF TGFDISGKTE QELFEAARGM GIEVDETMGK
GKLIDEIFGA KCEGNYIQPT FITDYPKEMS PLCKEHRDNP DLTERFELMV CGKEIANAYS
ELNDPIDQRE RFEDQMRLSE KGDDEANGII DEDFLRALEY GMPPTSGMGI GMDRLIMYLT
NNASIQEVLL FPQMRPEKKQ AQIELSDEEK FIIDLLTKNE NRMDLTQLKI TANLSGKKWD
ASMKNLSKHG LTKVVVDGEF KFVELVG
|
|---|
| |