| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3894 |
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| Symbol | malS |
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| ID | 6142972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3963567 |
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| End bp | 3965597 |
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| Gene Length | 2031 bp |
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| Protein Length | 676 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641618720 |
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| Product | periplasmic alpha-amylase precursor |
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| Protein accession | YP_001745859 |
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| Protein GI | 170684113 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 64 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTCG CCGCCTGTTT TCTGACACTC CTTCCTGGCT TCGCCGTTGC CGCCAGCTGG
ACTTCTCCGG GGTTTCCCGC CTTTAGCGAA CAGGGGACGG GAACATTTGT CAGCCACGCA
CAGTTGCCCA AAGGTACGCG TCCACTAACG CTAAATTTTG ACCAACAGTG CTGGCAGCCT
GCGGATGCGA TAAAACTCAA TCAGATGCTT TCCCTGCAAC CTTGTAGCAA CACGCCGCCT
CAATGGCGAT TGTTCAGGGA CGGCGAATAT ACGCTGCAAC TAGACACCCG CTCCGGTACA
CCAACATTGA TGATTTCCAT CCAGAACGCC GTCGAACCGG TAGCAAGCCT GGTCCGTGAA
TGCCCGAAAT GGGATGGATT ACCGCTCACA CTGGATGTCA GCGCCACTTT TCCGGAGGGA
GCCGCCGTCC GGGATTATTA CAGCCAGCAA ATTGCGATAG TGAAGAACGG TCAAATAACG
TTACAACCCG CTGCCACCAG CAACGGTTTA CTCCTGCTGG AACGGGCAGA AACTGACGCC
TCTGCCCCTT TCGACTGGCA TAACGCCACG GTTTACTTTG TGCTGACAGA TCGTTTCGAA
AACGGCGATC CCAGTAATGA CCAGAGTTAC GGACGTCATA AAGACGGTAT GGCAGAAATT
GGCACTTTTC ACGGCGGCGA TTTACGCGGC CTGACCAACA AACTGGATTA CCTCCAGCAG
CTGGGCGTCA ATGCTTTATG GATAAGTGCC CCATTTGAGC AAATTCACGG CTGGGTCGGC
GGCGGTACAA AAGGCGATTT CCCGCATTAT GCCTACCACG GTTATTACAC ACAGGACTGG
ACGAATCTTG ATGCCAATAT GGGCCGCGAA GCCGATCTAC GGACGCTGGT TGATAGCGCG
CATCAGCGCG GTATTCGTAT TCTCTTTGAT GTCGTGATGA ACCACACCGG TTACGCCACA
CTGGCGGATA TGCAGGAGTT TCAGTTTGGC GCGTTATATC TTTCTGGTGA CGAAGTGAAA
AAAACGCTGG GTGAACGCTG GAGCGACTGG AAACCTGCCG CCGGGCAAAC CTGGCATAGC
TTTAACGATT ACATTAATTT CAGCGACAAA ACAGGCTGGG ATAAATGGTG GGGAAAAAAC
TGGATCAGAA CCGATATCGG CGATTACGAC AATCCTGGAT TCGACGATCT CACTATGTCG
CTGGCCTTTT TGCCGGATAT CAAAACCGAA TCAACGACCG CTTCTGGTCT GCCGGTGTTC
TATAAAAACA AAACGGATAC CCACGCTAAA GTCATCGACG GCTTTACCCC TCGCGATTAC
TTAACCCACT GGTTAAGTCA GTGGGTTCGC GACTATGGGA TTGATGGTTT TCGGGTCGAC
ACCGCCAAAC ATGTTGAGTT GCCCGCCTGG CAGCAACTGA AAACCGAAGC CAGCGCCGCG
CTTCGCGAAT GGAAAAAAGC TAACTCCGAC AAAGCATTAG ATGACAAACC TTTCTGGATG
ACCGGTGAAG CCTGGGGCCA CGGCGTGATG CAAAGTGACT ACTATCGCCA CGGCTTCGAT
GCGATGATCA ATTTCGATTA TCAGGAGCAG GCGGCGAAAG CAGTCGATTG TCTGGCGCAG
ATGGATACGA CCTGGCAGCA AATGGCGGAG AAATTGCAGG ATTTCAACGT GTTGAGCTAC
CTCTCATCGC ATGATACCCG CCTGTTCCGC GAAGGTGGTA ATAAAGCAGC AGAGTTATTG
TTATTAGCGC CAGGCGCGGT ACAAATCTTT TATGGTGATG AATCCTCGCG TCCGTTCGGC
CCCACCGGTT CGGATCCGCT GCAAGGTACG CGTTCGGATA TGAACTGGCA GGATGTTAGC
GGTAAATCTG CCGCCAGCGT CGCGCACTGG CAGAAAATCA GCCAGTTCCG CGCCCGCCAT
CCCGCAATTG GCGAGGGCAA ACAAACGACA CTTTCGATGA AGCAGGGCTA CGGCTTTGTT
CGTGAGCATG GCGACGATAA AGTGCTGGTC ATCTGGGCTG GGCAACAGTG A
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| Protein sequence | MKLAACFLTL LPGFAVAASW TSPGFPAFSE QGTGTFVSHA QLPKGTRPLT LNFDQQCWQP
ADAIKLNQML SLQPCSNTPP QWRLFRDGEY TLQLDTRSGT PTLMISIQNA VEPVASLVRE
CPKWDGLPLT LDVSATFPEG AAVRDYYSQQ IAIVKNGQIT LQPAATSNGL LLLERAETDA
SAPFDWHNAT VYFVLTDRFE NGDPSNDQSY GRHKDGMAEI GTFHGGDLRG LTNKLDYLQQ
LGVNALWISA PFEQIHGWVG GGTKGDFPHY AYHGYYTQDW TNLDANMGRE ADLRTLVDSA
HQRGIRILFD VVMNHTGYAT LADMQEFQFG ALYLSGDEVK KTLGERWSDW KPAAGQTWHS
FNDYINFSDK TGWDKWWGKN WIRTDIGDYD NPGFDDLTMS LAFLPDIKTE STTASGLPVF
YKNKTDTHAK VIDGFTPRDY LTHWLSQWVR DYGIDGFRVD TAKHVELPAW QQLKTEASAA
LREWKKANSD KALDDKPFWM TGEAWGHGVM QSDYYRHGFD AMINFDYQEQ AAKAVDCLAQ
MDTTWQQMAE KLQDFNVLSY LSSHDTRLFR EGGNKAAELL LLAPGAVQIF YGDESSRPFG
PTGSDPLQGT RSDMNWQDVS GKSAASVAHW QKISQFRARH PAIGEGKQTT LSMKQGYGFV
REHGDDKVLV IWAGQQ
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