| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2951 |
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| Symbol | csdA |
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| ID | 6146569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3026637 |
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| End bp | 3027842 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641617820 |
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| Product | cysteine sulfinate desulfinase |
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| Protein accession | YP_001744975 |
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| Protein GI | 170680672 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0520] Selenocysteine lyase |
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| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily
[TIGR03392] cysteine desulfurase, catalytic subunit CsdA |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00101745 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGTTT TTAATCCCGC GCAGTTTCGC GCCCAGTTTC CCGCGCTACA GGATGCGGGC
GTCTATCTCG ACAGCGCCGC GACCGCGCTT AAACCTGAAG CCGTGGTTGA AGCCACCCGA
CAGTTTTATA GCCTGAGCGC CGGAAACGTC CATCGCAGCC AGTTTGCCGA AGCCCAACGC
CTGACCGCGC GTTACGAAGC TGCGCGGGAA AAAGTGGCAC AATTACTGAA TGCACCGGAT
GATAAAACTA TCGTCTGGAC GCGCGGCACC ACTGAATCCA TCAACATGGT GGCACAATGC
TATGCGCGTC CGCGTCTGCA ACCGGGCGAT GAAATTATTG TCAGTGTGGC AGAACACCAC
GCCAACCTCG TCCCCTGGCT GATGGTCGCC CAACAAACGG GGGCCAAAGT GGTGAAATTG
CCGCTTAATG CGCAGCGACT GCCGGATGTC GATTTGTTGC CAGAACTGAT TACTCCCCGT
AGTCGGATTC TGGCGTTGGG CCAGATGTCG AACGTCACTG GCGGTTGCCC GGATCTGGCG
AGAGCGATTA CTTTTGCTCA TTCAGCCGGG ATGGTGGTGA TGGTTGATGG TGCTCAGGGG
GCGGTGCATT TCCCCGCGGA TGTTCAGCAA CTGGATATTG ATTTCTATGC TTTTTCAGGT
CACAAACTGT ATGGCCCGAC AGGCATCGGC GTGCTGTATG GCAAACCAGA ACTGCTGGAA
GCGATGTCGC CCTGGCTGGG CGGCGGCAAA ATGGTTCACG AAGTGAGTTT TGACGGCTTC
ACGACTCAAT CTGCGCCGTG GAAACTGGAA GCAGGAACGC CAAATGTCGC TGGCGTCATA
GGATTAAGCG CGGCGCTGGA ATGGCTGACA GATTACGATA TCAACCAGGC CGAAAGCTGG
AGCCGTAGCT TAGCAACGCT TGCAGAAGAA GCGCTGGCGA AACGTCCAGG CTTTCGTTCA
TTCCGCTGCC AGGATTCCAG CCTGCTGGCC TTTGATTTTG CTGGAGTTCA TCACAGCGAT
ATGGTGACAC TGCTGGCGGA GTACGGTATT GCCCTGCGGG CCGGGCAGCA TTGCGCTCAG
CCGCTACTGG CAGAATTAGG CGTAACCGGC ACACTGCGCG CCTCTTTTGC GCCATATAAT
ACAAAGAGTG ATGTGGATGC GCTGGTGAAT GCCGTTGACC GCGCGCTGGA ATTATTGGTG
GATTAA
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| Protein sequence | MNVFNPAQFR AQFPALQDAG VYLDSAATAL KPEAVVEATR QFYSLSAGNV HRSQFAEAQR
LTARYEAARE KVAQLLNAPD DKTIVWTRGT TESINMVAQC YARPRLQPGD EIIVSVAEHH
ANLVPWLMVA QQTGAKVVKL PLNAQRLPDV DLLPELITPR SRILALGQMS NVTGGCPDLA
RAITFAHSAG MVVMVDGAQG AVHFPADVQQ LDIDFYAFSG HKLYGPTGIG VLYGKPELLE
AMSPWLGGGK MVHEVSFDGF TTQSAPWKLE AGTPNVAGVI GLSAALEWLT DYDINQAESW
SRSLATLAEE ALAKRPGFRS FRCQDSSLLA FDFAGVHHSD MVTLLAEYGI ALRAGQHCAQ
PLLAELGVTG TLRASFAPYN TKSDVDALVN AVDRALELLV D
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