Gene ECH_0002 details

Gene Information

• Locus tag: ECH_0002
• Symbol: rimM
• ID: 3927144
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ehrlichia chaffeensis str. Arkansas
• Kingdom: Bacteria
• Replicon accession: NC_007799
• Strand: +
• Start bp: 1005
• End bp: 1532
• Gene Length: 528 bp
• Protein Length: 175 aa
• Translation table: 11
• GC content: 29%
• IMG OID: 637901127
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_506837
• Protein GI: 88658505
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAAATG ATTTAATATG CCTCGGTGTG ATTACATCAT CTCACGGGAT TAGCGGACAT 
GTAAAAATAA AAACTTTTAC AGAAAACCCA GAAGATTTTA CATCTTACGG AACATTAACT 
GATGGGATAA ACACGTACGA AGTAGAAATA ATATCTATCA TATCACAAAA CATAATAATT 
GCACAAATTA AAGGCATAGT GTCAAGAACC GATGCAGATT TACTAAGAAA CAAAAAGTTT 
TTTGTAGAGA AAAACAAATT ACCTAACCCT ACAAATGATG ATGAATTCTA TTATAGCGAT 
TTAATAGGGC TAAACGTTGT TTTAGAAAAC AATAATGTTT ATGGAAACAT AAAGAAAATC 
CACAATTTTG GATCATGTGA TATTATAGAA ATACGTCTTT CTAATTCAAA AAAAAGCACT 
ATGTTACCTT TTACAAAAGA TATATTCCCC TATGTCAATG TCAAAGAAAA ATACATAATA 
ATAACATTGC CAGAAGTTAT AGGAAATAAC AGTGACATTC AACGTTAA 

 

Protein sequence

MENDLICLGV ITSSHGISGH VKIKTFTENP EDFTSYGTLT DGINTYEVEI ISIISQNIII 
AQIKGIVSRT DADLLRNKKF FVEKNKLPNP TNDDEFYYSD LIGLNVVLEN NNVYGNIKKI 
HNFGSCDIIE IRLSNSKKST MLPFTKDIFP YVNVKEKYII ITLPEVIGNN SDIQR