| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4027 |
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| Symbol | |
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| ID | 5714556 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009957 |
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| Strand | - |
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| Start bp | 93153 |
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| End bp | 94271 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641276939 |
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| Product | integrase family protein |
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| Protein accession | YP_001542235 |
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| Protein GI | 159046565 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.461361 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGAAA CACCAGAAAT TCAGCCCCCA GACGCCGAGA AATCGACCTC AGCGCCCTCC
GATTCGAACA ATCAAGCTCA GCGCGACGAG AGAGACCAAG TCAGCACCGA CCCCATCGCC
CTACCGGCCC ATGTGGCCGG GTCCGGCACG CTCGACCGGC TTGTCGACAC CGCCCGTGAT
TACGCGAGGG CCTCGACCGC CGAGAACACC AACAAAGCTT ATGCCGCCGA CTGGAAGCAC
TTCGCGCGTT GGTGCAGATT GAAGGGAACG GATCCCCTCC CCCCGTCTCC CGAAATGATC
GGGCTCTACC TGACCGATTT GGCAGCGCCG GCGAAAGGCA CCCCTGCCCT CTCCGTCTCT
ACGATCGAGC GCCGCCTGTC CGGCCTGGCC TGGAACTATG CGCAACGCGG CTTCTCGCTC
GATCGCAAGG ACCGCCATAT CGCCAACGTC CTCGCTGGGA TCAAACGCAG GCACGCGCGC
CCGCCTGTGC AAAAGGAAGC GATCCTGCCC GAGGACATTC TCGCCATGGT GGCCACCCTG
CCCTTCGATC TGCGCGGCCT GCGGGATCGG GCGATCTTGC TGATCGGCTT TGCAGGCGGT
CTGCGCCGCT CCGAAGTCGT CAGCCTGGAC GTCAGCAAAG ACGACACGCC TGACAGTAGC
GGATGGATTG ACGTCTTCGA AGATGGCGCG GTTTTGACAT TGAACGCAAA GACAGGCTGG
CGCGAGGTGG AAATCGGACG CGGATCCTCA GAACAGACCT GTCCTGTGCA TGCGCTCGAG
CAATGGCTGC ATTTCGCCAA GATCGATTTC GGCCCCGTGT TCACCCGCAC GTCGAGGGAC
GGGAAGCGGG CGATGGACGA GCGGCTCAAC GACAAGCATG TCGCGCGCCT CATCAAGAAG
ACGGTGCTGA AATCCGGCAT CCGAGCCGAG CTGCCCGAAA ACGAGCGCCT TGCGCTGTTC
TCCGGTCACT CGTTGCGCGC CGGTCTCGCA AGTTCGGCCG AAGTCGATGA GCGCTTTGTC
CAGAAACAGC TCGGACACGC CTCGGCCGAG ATGACCCGCC GCTACCAGCG CCGTCGCGAC
CGGTTCCGGG TGAACCTAAC CAAAGCAGCC GGTCTCTGA
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| Protein sequence | MEETPEIQPP DAEKSTSAPS DSNNQAQRDE RDQVSTDPIA LPAHVAGSGT LDRLVDTARD
YARASTAENT NKAYAADWKH FARWCRLKGT DPLPPSPEMI GLYLTDLAAP AKGTPALSVS
TIERRLSGLA WNYAQRGFSL DRKDRHIANV LAGIKRRHAR PPVQKEAILP EDILAMVATL
PFDLRGLRDR AILLIGFAGG LRRSEVVSLD VSKDDTPDSS GWIDVFEDGA VLTLNAKTGW
REVEIGRGSS EQTCPVHALE QWLHFAKIDF GPVFTRTSRD GKRAMDERLN DKHVARLIKK
TVLKSGIRAE LPENERLALF SGHSLRAGLA SSAEVDERFV QKQLGHASAE MTRRYQRRRD
RFRVNLTKAA GL
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