| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3144 |
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| Symbol | ugpB3 |
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| ID | 5712200 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3310655 |
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| End bp | 3312037 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641269071 |
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| Product | sugar ABC transporter, periplasmic sugar-binding protein, putative |
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| Protein accession | YP_001534478 |
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| Protein GI | 159045684 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTATTC AAGATGGGTA TAGTCGAGCC AATAACGCGT CGCAACGGGA GGAAGAGATG
CGCAAGAGAA CCTTTTTGGC CACGGTCGCG ACCGCGGCCC TTGTCGCCAT GGCCCCGGTC
ACGGTCTCGG CTGAAGAGCT CGGCAAATAC AACCTGCTGC CGGGCAAGCC CTTCGAAGGC
ACCACCCTCA ACATCCTCAG CGTGGTCACC CCGCAATTCG ACGGGCTGAT GCTGCGGGAC
GAGGAGTTCA CCGAGCTGAC CGGCATCGAG ACCGAGTGGA CCTTCATCCC CTTCGGCTCC
CTGCAGGAGA AGATCAATGC CGAAGGCATC GCCGCCAACG GCACCTTCGA TGTGGTCAAC
TACCTCGACA GCTGGGGACC GCCCAACGCC CACTGGCTCA AGCGGATCGA CGAGTTGATG
GCCCGTGACG GGATCTCCAT GGACCGCTAC CCCGCGGCCT TCGCCCGCTC GGCGCAGTTC
GAGGGCGAGA CTCTGGGCTT CCCGCTGCGC GCCCATCCGC AGCTGATGTT CTATCGCAAG
GACCTGATCC CCGAGCCGCC CGAGACCTGG GAGGACGTGA TCCGGATCGG CAAGGAGCTG
AAGGAAACCA ACCCCGACAT CGCGCCGCTC GCGCTCTACT ACAACAATGA CGGCAACCGG
CAGAACCTGT TCATCTGGCT CAACTTCCTG TGGGCCGCCG GGGCGGATAT CTTCAACGAG
GACGGCACCG CCGCCTGGGC CACGCCCGAA GGCATTCAGG CCACTAAGGA CTATATCGAG
CTGCACACCG TCCACCAGAT CACCAACCCC AACTCGCTCG CCTTCGTCGA GCAGGACGCG
CGGCAGTCCT TCATGCAAGG CAACTCGGCG ATGATGCCGG TGTGGTGGTG GGCCTATTCC
GGCTTCTACA ACCCCGACAG CTCCACCCTG ACCAAGGACC AGGTCGGCTT CACGGGCATG
CCCTCCTATA AGGGCGTGAC CAAGACCTAT GCGATCTCTA TGCCCTTCTC GATCTCGGAG
TATTCCGAGA ACCAGGAAGC GGCCTGGGAG TTCCTGAAAT GGCTGTCCAA CCCCGAGATG
GACAAGGCCA ACGCCATCGA ACGCGAGGTG GGCGGCAAGA CCATCATCAA CAACGTGGTC
ACCCATATCT CGTCCTTGCA GGACCCGGAG GTGAACGCCG CCAATGACGG CATCCAGGCC
GCCGCATGGG AGAGCCTGAA GGAATCCGAC ATCATGCCCC AGATCCCGGA ATGGTCCGAG
GTCGGTGACA TCCTGTCCGC CGCGATCGCC GAGGCCGCCG CGGGCGGCGA TGTCGAGGAA
CTGATGACCG CCGCGGCCGA CCGCGCGGAC CGGGTTCTGC GGCGCGCAGG CCGGATCCAG
TAA
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| Protein sequence | MRIQDGYSRA NNASQREEEM RKRTFLATVA TAALVAMAPV TVSAEELGKY NLLPGKPFEG
TTLNILSVVT PQFDGLMLRD EEFTELTGIE TEWTFIPFGS LQEKINAEGI AANGTFDVVN
YLDSWGPPNA HWLKRIDELM ARDGISMDRY PAAFARSAQF EGETLGFPLR AHPQLMFYRK
DLIPEPPETW EDVIRIGKEL KETNPDIAPL ALYYNNDGNR QNLFIWLNFL WAAGADIFNE
DGTAAWATPE GIQATKDYIE LHTVHQITNP NSLAFVEQDA RQSFMQGNSA MMPVWWWAYS
GFYNPDSSTL TKDQVGFTGM PSYKGVTKTY AISMPFSISE YSENQEAAWE FLKWLSNPEM
DKANAIEREV GGKTIINNVV THISSLQDPE VNAANDGIQA AAWESLKESD IMPQIPEWSE
VGDILSAAIA EAAAGGDVEE LMTAAADRAD RVLRRAGRIQ
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