| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2610 |
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| Symbol | rluD |
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| ID | 5713508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2773631 |
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| End bp | 2774674 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641268534 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_001533944 |
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| Protein GI | 159045150 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.000916578 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGGGCA TCCCAGAGGC CAGCGAGGAA ATCACGGTCG AGGTCCAGCC GGACCCGCCG
CCGCGCCTTG ATAGGGCGCT GGCGCGGGAT GTGCCAGAGG GGCTGGGCCT GAGCCGGTCG
CGGCTCGTCA AGCTGATCGA GGCGGGCGAT GTGCGCCGGG GGGCGGAGGT GCTGGCCAGC
CCCAAGGCCC GCGTCGCGGC GGGCGACGTG CTGACCCTGC GGCTGGGCGC GCCCGCCGAG
GTGCCGCTGG TGGCCGAGGC GATCCCGCTC GATGTGATCT TCGAGGATGC GGACCTGATC
GTGGTCAACA AGCCCGCGGG CATGGTGGTG CACCCCGCCC CCGGCAGTCC CGCGGGCACG
CTCGTGAACG CGCTGATGCA CCATTGCGGC GACAGCCTGT CGGGCATCGG TGGCGAGAAG
CGGCCCGGCA TCGTCCACCG GATCGACAAG GACACGTCCG GCCTGCTGGT GGTGGCGAAA
TCCGACCACG CCCATCAGGG GCTCGCGGCC CAGTTCGCCG CCCACAGCGT CGAGCGAATC
TATGACGCGC TGGTCCACGG GGTGCCGGAG GCCTCCGATC CGCGCCTGCG CGGCCTGCCC
ATGGTCCGGT TCGAGCCCGG CGGCGTGCTG TGTCTGCGCG CATCCCTCGC GCGCCACCGC
ACCGACCGGC AGCGCCAGGC GGTCGTGGCC GAAGGCCAGG GGCGTCACGC GGTCACCCGG
GCGCGCGTCG AGGCGCGCTT CGGCGATCCG GCCGGGGTGG CGCATCTGGC CTGCTGGCTG
GAGACCGGCC GCACCCACCA GATCCGCGTC CATCTGGCCC ATATCGGCCA CGGGCTGCTG
GGCGATCCGG TCTATGGCGG GCGCAAGCGC CTGTCGGCCA AGGCTTTTTC GCCTCAGGCA
TTGGCCGCCG CCGAAGCCTT CCCGCGCCAG GCCCTGCATG CCCGGACCCT CGGCTTCGTG
CATCCCGTGA CCGGGGCGGC GCTGTCCTTC GCCGCCCCGA TGCCTGCCGA CATGGCGGCC
CTCTGGGCGG CGCTGGGCGG TTAA
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| Protein sequence | MSGIPEASEE ITVEVQPDPP PRLDRALARD VPEGLGLSRS RLVKLIEAGD VRRGAEVLAS
PKARVAAGDV LTLRLGAPAE VPLVAEAIPL DVIFEDADLI VVNKPAGMVV HPAPGSPAGT
LVNALMHHCG DSLSGIGGEK RPGIVHRIDK DTSGLLVVAK SDHAHQGLAA QFAAHSVERI
YDALVHGVPE ASDPRLRGLP MVRFEPGGVL CLRASLARHR TDRQRQAVVA EGQGRHAVTR
ARVEARFGDP AGVAHLACWL ETGRTHQIRV HLAHIGHGLL GDPVYGGRKR LSAKAFSPQA
LAAAEAFPRQ ALHARTLGFV HPVTGAALSF AAPMPADMAA LWAALGG
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