Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1747 |
Symbol | mmsA |
ID | 5713314 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 1812332 |
End bp | 1813831 |
Gene Length | 1500 bp |
Protein Length | 499 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641267665 |
Product | acylating methylmalonate-semialdehyde dehydrogenase |
Protein accession | YP_001533090 |
Protein GI | 159044296 |
COG category | [C] Energy production and conversion |
COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.207366 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.6572 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGAGT TGAGCCATTT CATCAACGGC AAGCGCGTGG CAGGCACGTC GGGCCGGTTC GCGGATGTCA TGAACCCGGC CACGGGCGAG GTGCAGGCCA GGGTGCCACT TGCGTCGCCC GAAGAGCTGG ACGCCGCTGT GGCCGCCGCG GCCGCAGCAC AGCCCGCCTG GGCCGCCACC AATCCCCAGC GCCGCGCGCG GGTGCTGATG GAATTCGTGC GCCTGTTGAA CCGAGACATG GACAAGCTGG CCGAGGCCCT GAGCCGCGAG CATGGCAAGA CCCTGCCCGA TGCCAAGGGC GACGTGGTGC GCGGGCTGGA GGTGGTCGAG TTCTGCATCG GCGCGCCCCA TCTTCTGAAG GGCGAATTCA CCGACAGCGC GGGTCCGGGC ATCGACATGT ATTCCATGCG CCAGGCCTTG GGCGTGGTGG CAGGGATCAC CCCGTTCAAC TTCCCCGCCA TGATCCCGAT GTGGAAGATG GCCCCCGCCC TGGCCTGCGG CAACGCCTTT ATCCTCAAGC CGTCGGAGCG CGATCCGTCC GTGCCGCTGA TGCTGGCCGA GCTCATGACC GAGGCCGGGC TGCCCGACGG GCTGCTGCAG GTGATCAACG GCGACAAGGG CGCGGTGGAT GCGATCCTCG ACAATGACAC GATCCAGGCG ATCGGCTTCG TCGGCTCCAC CCCGATCGCG GAATACATCT ATTCCCGCGG CTGTGCCAAC GGCAAGCGCG TACAGTGTTT CGGGGGGGCC AAGAACCACA TGATCATCAT GCCGGACGCC GATCTCGACC AGGCGGCGGA CGCGCTGGTC GGCGCAGGCT ACGGGGCTGC GGGCGAGCGG TGCATGGCGA TCTCGGTCGC GGTGCCCGTC GGCGAAGAGA CCGCGGACCG GCTGATCGAG AAGCTGGTGC CGCGGGTCGA GGCGCTGAAG GTCGGGCCCT ATACCTCGGG CACGGATGTC GATTACGGCC CCGTGGTGAC CGCCGCGGCC AAGGCCAATA TCGAGCGGCT GGTGCAATCC GGCGTCGATC AGGGCGCCAA GCTGGTGGTG GACGGGCGGG ACTTCTCGCT GCAGGGCTAT GAAAACGGGT TCTTCGTCGG CCCGCACCTG TTCGACAATG TCTCCAAAGA AATGGACATC TATCGGACCG AGATTTTCGG CCCCGTTCTG TGCACCGTGC GCGCCAAATC CTACGAGGAA GCCCTCGGTC TGGCGATGGA CCACGAATAC GGCAACGGCA CCGCGATCTT CACCCGCGAC GGGGACGCGG CGCGCGACTT CGCCAACCGC ATCAATATCG GTATGGTGGG GATCAACGTG CCGATCCCGG TGCCGCTGGC CTACCACACC TTCGGCGGCT GGAAGAAGTC CGGATTCGGC GACCTGAACC AGCACGGGCC AGACGCGTTC CGGTTCTATA CGCGGACCAA GACCGTCACC GCCCGCTGGC CCTCGGGCAT CAAGGAAGGC GGAGAATTCT CGATCCCCGT GATGGAGTGA
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Protein sequence | MEELSHFING KRVAGTSGRF ADVMNPATGE VQARVPLASP EELDAAVAAA AAAQPAWAAT NPQRRARVLM EFVRLLNRDM DKLAEALSRE HGKTLPDAKG DVVRGLEVVE FCIGAPHLLK GEFTDSAGPG IDMYSMRQAL GVVAGITPFN FPAMIPMWKM APALACGNAF ILKPSERDPS VPLMLAELMT EAGLPDGLLQ VINGDKGAVD AILDNDTIQA IGFVGSTPIA EYIYSRGCAN GKRVQCFGGA KNHMIIMPDA DLDQAADALV GAGYGAAGER CMAISVAVPV GEETADRLIE KLVPRVEALK VGPYTSGTDV DYGPVVTAAA KANIERLVQS GVDQGAKLVV DGRDFSLQGY ENGFFVGPHL FDNVSKEMDI YRTEIFGPVL CTVRAKSYEE ALGLAMDHEY GNGTAIFTRD GDAARDFANR INIGMVGINV PIPVPLAYHT FGGWKKSGFG DLNQHGPDAF RFYTRTKTVT ARWPSGIKEG GEFSIPVME
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