Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1556 |
Symbol | |
ID | 5712700 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 1617876 |
End bp | 1619435 |
Gene Length | 1560 bp |
Protein Length | 519 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641267471 |
Product | putative ATP-dependent AMP-binding enzyme |
Protein accession | YP_001532899 |
Protein GI | 159044105 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.493299 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.349479 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTCAGGCG ACTTGCAACC GCGCCGCGCG GGGCCTAGCA CGGGGGTCAT GCCGTTGCCC GACGATTTCG ACCCCGCCGC ACCCTGCCCC GCGCCATTCA ACCTGGCGGG GTATGTCTTG GCCGCCGGGG ATGAGGACAA GATCGCGCTG GAGGTGCTGG GCGGTGGCGC GGTGCGCTGG ACCTTCGGAG ATCTGCGCCG GGCGGTGGCG GGCTATGCCG CAGCACTGCG GACCGAAGGG TTGGCGCCTG GTGACAAGCT ATTGATGCGG TTGGGAAATA CGGTGGAGTT TCCGCTGCTG TTTCTGGCTG CGGTGGCGGC AGGCGTGGTG CCGGTGCCGA CCTCGGCGGC GCTGACGGTC GAGGAGGTCG ACTGGATCGC GGCGGACCTC GCCCCGGCGC TGACGGTGCA GGCGCCGGGC GTTGCGGGGC CGTCGCGGGG CCGCGTGGTG GCATTGGAGG CGCTGGTGCC GGACCGGGAC GCGCCGCTGG CGCCGGTGCC GGGGGATCCG GACCGCATGG CTTACGTGGT CTATACCTCG GGCAGTTCGG GGCGGCCGCG GGCGGTGGCC CATGCGCATC GCGCGATCTG GGCCCGGCGG ATGATGTGGC GCGACTGGTA CGGGATGGGG CCGGAGGACC GGATCCTCCA TGCCGGGGCG TTCAACTGGA CCTATACGCT GGGCGTCGGG CTGCTGGATC CGTGGGCGAT GGGGGCGACG GCGCTGATCC CCGAGGCCGG GACAGACAGT GCCGCCCTGC CCGAGGCGCT GGCCGCGAGT GGGGCCAGTA TTTTTGCCGC GGTTCCAGGG GTATACCGAC AGATTTTGAA GCAAGAAGCC CTGCCCCGGC TCCCCCGTCT GCGCCACGGG TTGACGGCGG GCGAAGCGCT GCCCGACAGC CTGCGCGCGG CGTGGCGGGA CCGTGTCGGC ACCGAGCTTT ACGAGGCGTT GGGGATGTCG GAATGCTCCA CCTTCATCTC GGCCCATCCG GGCCGACAGG CCCCCCCGGG CCATGCGGGG TTTGCCCAGG CCGGGCGGCG GATCGCGGCG CTGGACGCCG ACGGGGTCGA GGTGGCGCGG GGCACATCCG GAGTTCTGGG CGTGCATCGC GGCGATCCGG GGCTGATGCT GGGCTACCTG GAGGGCGGTC GGCCCCGCCT GCCCCTGACC GGCGATTGGT TCGTGACCGG CGACATGGTG GAGATCGCCT CGGATGGCGC GGTGCGCTAC CTCGGCCGGG GCGACGACAT GATGAACGCG GGCGGATTCC GGGTCTCGCC ACTGGAGGTC GAAAAGGCGT TCCACGGGCG GCCGGAGATT GGCGAGGCGG CGGCGGTGGA GGTGAAGATC AAGGCGGATG TCACTGTGAT CGCGTTATTT TACGTCGCCG CCGCCCCGGT GACGGAGGCC GCACTTGCCG CGGAGGCCGC GCAACATCTG GCCCGGTACA AGCAGCCACG GCTTTACATT CCGGTCGAAA CCCTGCCCAA GGGGCGGACC GGAAAACTGG ATCGCCGGGC GCTGCGCGCG GCGTATGAGG CACGCCATGA TCAAGCTTGA
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Protein sequence | MSGDLQPRRA GPSTGVMPLP DDFDPAAPCP APFNLAGYVL AAGDEDKIAL EVLGGGAVRW TFGDLRRAVA GYAAALRTEG LAPGDKLLMR LGNTVEFPLL FLAAVAAGVV PVPTSAALTV EEVDWIAADL APALTVQAPG VAGPSRGRVV ALEALVPDRD APLAPVPGDP DRMAYVVYTS GSSGRPRAVA HAHRAIWARR MMWRDWYGMG PEDRILHAGA FNWTYTLGVG LLDPWAMGAT ALIPEAGTDS AALPEALAAS GASIFAAVPG VYRQILKQEA LPRLPRLRHG LTAGEALPDS LRAAWRDRVG TELYEALGMS ECSTFISAHP GRQAPPGHAG FAQAGRRIAA LDADGVEVAR GTSGVLGVHR GDPGLMLGYL EGGRPRLPLT GDWFVTGDMV EIASDGAVRY LGRGDDMMNA GGFRVSPLEV EKAFHGRPEI GEAAAVEVKI KADVTVIALF YVAAAPVTEA ALAAEAAQHL ARYKQPRLYI PVETLPKGRT GKLDRRALRA AYEARHDQA
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