Gene Dshi_1121 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1121 
Symbol 
ID5711089 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1147479 
End bp1147988 
Gene Length510 bp 
Protein Length169 aa 
Translation table11 
GC content62% 
IMG OID641267032 
Productpeptidase A24A prepilin type IV 
Protein accessionYP_001532464 
Protein GI159043670 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4960] Flp pilus assembly protein, protease CpaA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.283506 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.89566 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGTGA CCGTTTCCCA AGCTCTCTGG TTTCTGCCGT TCATCTTGCC GATCTGCCTG 
TTCGTGGCCT GGAGCGACAT GAAATTCATG CGCATCCCCA ACAGATCGGT TCTGCTCCTG
CTGGGAATGT TCGCGATCGT GGGCCTCTTG GCCCTGCCGC TGCTGGATTA CGCATGGCGA
TGGGTCCATG TGATCGCCGT GCTGGCGGTC GGCTTCGTGA TGTCCAGTGC GGGCCTCGTT
GGGGCGGGGG ACGCGAAGTT CGCCGCCGCC ATGGCCCCGT TCGTGGCGCT GCAGGACGCG
CTGTTGGTGG TTGTGCTGTT CTCCGCGATC CTGCTCGGCG CCTTCGCGAC CCATCGCCTC
GCGCGGATGC TGCCTGCGGT CCGGCGACTG ACCCCAGATT GGGAAAGCTG GACGCGCAAG
CGCGACTTTC CCATGGGGCT CGCTCTGAGC GGGACGCTGA TTTTCTACTT TTTGCTGCCT
GTTCTTCTTC CGCAGGTCAC GCTTTCTTAA
 
Protein sequence
MAVTVSQALW FLPFILPICL FVAWSDMKFM RIPNRSVLLL LGMFAIVGLL ALPLLDYAWR 
WVHVIAVLAV GFVMSSAGLV GAGDAKFAAA MAPFVALQDA LLVVVLFSAI LLGAFATHRL
ARMLPAVRRL TPDWESWTRK RDFPMGLALS GTLIFYFLLP VLLPQVTLS