Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1044 |
Symbol | |
ID | 5711012 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 1078350 |
End bp | 1079054 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641266955 |
Product | transcriptional regulator |
Protein accession | YP_001532387 |
Protein GI | 159043593 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.000547437 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCACCA CCCCCCCGCG CATGAACGCC GCCGAAGCGG CCTACCGGAC GATCCGGGCC AAGATCGTGT CGGGCGAGTT GGCGGAGGGG GAGCGGCTGA CCGAGAAGCG GCTCTCCAAG GACCTGGGCC TGTCGCGCAC CCCGATCCGC GAGGCGGTCG GGCGGCTGAT CCTCGAAGGC TTCGTCGAGC GGCAATCGGG CTATACCACC CGGGTCGCGC GCTTCCCCGA GGACGAGATC GCCCAGGTCT TCGAGATCCG CGGCGTGCTG GAGGCCTATT CCGCCCGCCG CGCGGCCCGG CACGCCCGGC CCGATGACAT CGCCGAGATG CGCGAGGTCT ACGCGGTGAT GGCGGCCAAC TCGCCGCCCC GCTCCGAGGC TGCCTACCAG GTGCTGACCG AGGCGAATGA GCGGTTTCAC AAGATCATCC TGCGCGCGGC CCAGTCGCCC AAGCTCACCG CGCTGATGAC CATGGCGCTC GATGTGGGGA TGGTGGTGCG GACCTACCGG ATCTTCACCG AGGCCGACCT GACCCGCAGC CTGCACCACC ATGGCGAGCT GATCGATGCC ATCGCCGCCC GCGCCCCCGA CTGGGCCGAG AGCGTCATGC GCGCCCACCT GCTGGCCGGG GCGGCGCGGG TGGCCGAGCA TACGGGCGAT ATCGGGCAGA AGACGCCGCC GCCGGATGTG AAGGCCGCCG AATGA
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Protein sequence | MSTTPPRMNA AEAAYRTIRA KIVSGELAEG ERLTEKRLSK DLGLSRTPIR EAVGRLILEG FVERQSGYTT RVARFPEDEI AQVFEIRGVL EAYSARRAAR HARPDDIAEM REVYAVMAAN SPPRSEAAYQ VLTEANERFH KIILRAAQSP KLTALMTMAL DVGMVVRTYR IFTEADLTRS LHHHGELIDA IAARAPDWAE SVMRAHLLAG AARVAEHTGD IGQKTPPPDV KAAE
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