Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0994 |
Symbol | |
ID | 5710510 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 1023150 |
End bp | 1025069 |
Gene Length | 1920 bp |
Protein Length | 639 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641266905 |
Product | TRAP transporter |
Protein accession | YP_001532337 |
Protein GI | 159043543 |
COG category | [R] General function prediction only |
COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.166639 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAGCC AGGATATCGA CCCCGCACAA GTGGGCAGTG CCGAGGGCGT GCCCACCACC CTGAGGGAAC GCGCCGCCGC GGGTCTGTCC CTGCTCATCG GGATTTTCGT CTTCTACACC TCCTTTTTCG GCGCGTTCGA GACACTGATC CAGCGCGCGG GCTTCGTGGC GATGATCGTC ACCATGGCGG TGCTGCTCTA TCCCACCGCG GGCAAGACGC GGCTGCGGCC CCTAGGCATC GTGCTCGATC TGGCGATGGT GGGCTGGGTC GCGGTCTCCG CGGTCTATGT GATCGCGAAT TTCGAGCGGA TCATGGTCGA GCTGCCCTTC GCCGAGCCGA TCGATGCCTG GCTCGGCTTC GGCACCCTGC TGGTGATCCT GGAGCTTGCC CGCCGCACCG CGAGCGTGGT GTTTCCGATC ATCGTGGGCG GCATGGTGGC CTATGCGTTT TTCGGCGATG CGATCCCCGG CTCCTTCGGG CATCGCGGCT TCGGCATCTA CTATATCACC GAGGTGATGT TCCTGTCCGA CCGGGGCCTG TGGGGGATGC TGGTCTCCAT CGCCTCGACG ACGCTCGCGG CCTTTATCCT GTTCGGCGCG CTCTTGCTGC ACACCGGGGC CGGGCAGACC TTCTTCGACC TCTCGGCCCG CGCAGGCGGG GCGAGCCCCG GCGGGGCGGC CAAGATCGCC ACCATCGCCA GCGGGCTTTT CGGGTCGATC TCCGGCTCGT CGGTGGCCAA TATCGCCACC ACCGGCAACT TCACCATCCC GCTGATGAAG CGCCTGCGCT ACCCCGCGCC CTTTGCCGGC GGGGTGGAGG CCGTGGCCTC CACTGGCGGG CAGCTGGCCC CGCCGATCAT GGGCACCGCC GCCTTCGTGA TGGCCGAGCT TGTCGGCGTG AACTACTGGA CCATCGTGGC CGTCGCCTTC CTGCCGGCGC TGCTGTTCTA TATCGGCGTC TTCACCACCG TGCACCTGGT GGCCAAGCGT ACCGGGCTGG GGCAGGTGGA TGCCGCCGAC CTGCCGGACT GGCGCGCGGC GCTGGACTGG CGGCGTCTGG CGCCCATCCT CGCCGGGATT GCCGGGCTGG CCTGGGGCAT CTGGAACGGC AATTCGATCC AGCTGACCGC GTGCTACGGC ATGATCGGGA TCATGGTCGC CTACACCGTG GCCACCCTGA CCGGCGGCGG CACTTGGGCC GAGGTCATCG CCACCCTGAT CCGCGCCTTC CGCGATGGCG GCAAGGGCGT GGTGATCGTC GGCATCCTGC TGGTGGCGGC ACAGGTCTTC GTGGCCATGG TCAACCTCAC CGGCGTCGGT GTCGCCATCA CGTCCCAGAT CCTCGCCTTC GCCGGGGACA GCATCTGGCT GATCGCGGTG ATCATGGCGG GTGTGTGCCT GATCGCGGGG ATGGGCCTGC CGACCTCGGC GGCCTACGTG CTGGTGGCGG CGGTCTTCGC GCCGGTGCTG ATCCAGCAGG GGCTCGACCC GGTCATGGTG CATCTCTTCG TGCTCTACTA TGCCGCGCTC AGCGTCATCA CGCCCCCGGT CTGCGTGGCG GTCTTCGTGG CCAGTACCAT CGCGCAAGCC CCGTGGCTTG CGGTGGCCCG CGACACCCTG CGACTGGGCG GGACGGCCTA TGCCCTGCCG ATGTTGTTCA TCGCCTATCC CGGGCTGCTG CTGGCGGGTG GCCCGGCCGA GATCGCGCTG GCCATCGTCT CGGGCACGGT CTTCGTGATG GCGGTGGCAG CGCTCTTTGC CGCGCAACCG GTGTCGCGCC TCGCACTGGT CTCGCCGCTC TTCTGGATCG CGGTGGCGGG GCTCGCCCTG CTCCATGGCT GGCTGCCCTC GCTGGCCGCG CTGGGCCTGT TGATCCTCGG CTTCCGGCTG CCGGAGGCGC CGCGCCGCGC GGCCGCCTAG
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Protein sequence | MTSQDIDPAQ VGSAEGVPTT LRERAAAGLS LLIGIFVFYT SFFGAFETLI QRAGFVAMIV TMAVLLYPTA GKTRLRPLGI VLDLAMVGWV AVSAVYVIAN FERIMVELPF AEPIDAWLGF GTLLVILELA RRTASVVFPI IVGGMVAYAF FGDAIPGSFG HRGFGIYYIT EVMFLSDRGL WGMLVSIAST TLAAFILFGA LLLHTGAGQT FFDLSARAGG ASPGGAAKIA TIASGLFGSI SGSSVANIAT TGNFTIPLMK RLRYPAPFAG GVEAVASTGG QLAPPIMGTA AFVMAELVGV NYWTIVAVAF LPALLFYIGV FTTVHLVAKR TGLGQVDAAD LPDWRAALDW RRLAPILAGI AGLAWGIWNG NSIQLTACYG MIGIMVAYTV ATLTGGGTWA EVIATLIRAF RDGGKGVVIV GILLVAAQVF VAMVNLTGVG VAITSQILAF AGDSIWLIAV IMAGVCLIAG MGLPTSAAYV LVAAVFAPVL IQQGLDPVMV HLFVLYYAAL SVITPPVCVA VFVASTIAQA PWLAVARDTL RLGGTAYALP MLFIAYPGLL LAGGPAEIAL AIVSGTVFVM AVAALFAAQP VSRLALVSPL FWIAVAGLAL LHGWLPSLAA LGLLILGFRL PEAPRRAAA
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