| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0888 |
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| Symbol | |
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| ID | 5710578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 903322 |
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| End bp | 904296 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641266798 |
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| Product | pyridoxal-5'-phosphate-dependent protein beta subunit |
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| Protein accession | YP_001532234 |
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| Protein GI | 159043440 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.520177 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGACA CGATCGACCC GGCGGTGATC CCGACCTATG ACGACGTGGT CGCCGCCCAT
GAGCGGATCA AACCCCATAT CCATCGCACG CCCGTCCTGA CCTCGTCCTA TTTCAACGAC
CTGGTCGGCG CGGAGCTGTT CTTCAAATGC GAGAACTTCC AGAAGGCGGG CGCTTTCAAG
GTGCGCGGGG CCTGCAATGC GGTGTTCGGC CTGAGCGATG CGTTGGCCGA GCGCGGTGTG
GCGACGCATT CCTCGGGCAA CCATGCGCTC TCGCTCAGCT ATGCCGCCGG GCGCCGGGGC
ATTCCGTGCA ACGTGGTCAT GCCGCGCACC GCACCGGAGG CCAAGAAGGC GGCCGTCCGG
GGCTATGGCG GGATCATCAC CGAATGCGAG CCCTCGACAA CCTCCCGCGA GGCGGTCTTT
GCCGAGGTGC AGGAGCGCAC CGGCGCGGAA TTCGTCCATC CCTATAACGA CCCGCGGGTC
GTGGCGGGGC AGGGCACCTG TTCGCGCGAG TTCATGGAGC AGACCGACGG GCTGGACATG
ATGATCGCCC CCATCGGCGG TGGCGGCATG ATCTCGGGTT GCTGCCTGAC CCTGTCGAAC
ATCGCACCCG AGGTGCAGAT CATCGCCGCC GAGCCGGAGC AGGCCGACGA CGCCTATCGC
AGCTTCAAGG CCGGGCACAT CATCGCCGAC GACGCGCCGG TCACCATTGC CGACGGGTTG
AAGGTGCCTC TCAAGGATCT CACATGGCAT TTCGTGTCCA ACCATGTGAG CGATATCCTG
ACCGCCAGCG AGCAGGAGAT CATCGACGCG ATGAAGCTCA CCTGGCAGCG CATGAAGATC
GTGATGGAGC CGAGCTGTGC TGTGCCGCTG GCCACCATTC TGAAGAACAA GGATAAATTC
GCCGGCAAGC GCGTCGGTGT GATTGTGACG GGCGGCAATG TCGATCTCGA CAAATTGCCG
TGGATCACGG GCTAA
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| Protein sequence | MKDTIDPAVI PTYDDVVAAH ERIKPHIHRT PVLTSSYFND LVGAELFFKC ENFQKAGAFK
VRGACNAVFG LSDALAERGV ATHSSGNHAL SLSYAAGRRG IPCNVVMPRT APEAKKAAVR
GYGGIITECE PSTTSREAVF AEVQERTGAE FVHPYNDPRV VAGQGTCSRE FMEQTDGLDM
MIAPIGGGGM ISGCCLTLSN IAPEVQIIAA EPEQADDAYR SFKAGHIIAD DAPVTIADGL
KVPLKDLTWH FVSNHVSDIL TASEQEIIDA MKLTWQRMKI VMEPSCAVPL ATILKNKDKF
AGKRVGVIVT GGNVDLDKLP WITG
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