| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0739 |
|---|
| Symbol | ppx |
|---|
| ID | 5711174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 744912 |
|---|
| End bp | 746432 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641266647 |
|---|
| Product | Ppx/GppA phosphatase |
|---|
| Protein accession | YP_001532085 |
|---|
| Protein GI | 159043291 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0248] Exopolyphosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAAGACG AAGACTGGGG ACCGTTCGGA AAGGCGTTGT TCGAAGACCC GTCTGCTCAG
GCCTTGGGCC GGGTGGGTGT CATCGACGTC GGATCAAACT CGGTCCGGAT GGTGGTATTT
GACGGGGCGG CGCGGTCGCC CGCGTATTTT TATAATGAAA AGGTGATGGC GGGCCTCGGG
GCCGGCCTGA GCCAGTCCGG GCGGCTCAAT CCAGAGGGCC GCATCCGGGC CATGGATGCG
ATGAAGCGGT TTGTCCTGCT GGCGCAATCC ATGAACGTGT CCCCGCTGGT AGCTGTTGCA
ACAGCTGCAA TGCGGGAGGC GGAGGACGGT CCTGCGTTCA GGGAGGAGTT GACGCAGGAG
ACCGGCCTCC GCCTCTGGGT TATCGACGGT GCCGAAGAAG CCCGCCTCAG TGCGCAGGGC
GTGTTGCTGG GCTGGCCCGG GGCCACGGGG CTGGTCTGCG ATATCGGCGG CTCGTCCCTG
GAACTGGCGG AGCTGTCGGA GGGGCAGGTC GGCAAGCGCG AGACCTCGGC CCTCGGCCCG
CTGAAGCTGC GCGACGTGCC CGGGGGCAAG AAGGGGCTGA AGGCCCATAT CCGGTCCGAA
CTCGACACTC TGCGCGCCCG GATCGACGGC AGCTACGACC GGCTGTTCCT GGTGGGCGGC
TCCTGGCGGG CCATCGCGCG GCTGGACATG ATCCGCCGCG AGTACCCGCT GGCCGTGCTG
CATGAGTACC GCATGAGCCC GCGCGCGGTC TCCGAAACCA TCGCGATGAT CCAGAACAAC
ACGCCCGAGG CGCTGCGCGC CATGTCCGGC ATCGGCGAGG CGCGGATGTC CCTGCTGCCG
GAGGCGGCAC AGGTGCTCGG GCCCCTGATC CGCACCTTCC GACCCAAGGA AATCGCGGTC
TCGGCCTACG GGATCCGCGA GGGTCTGCTT TACGAGCAGA TGCCGCAGAA GCTGCGCAAC
CGCGATCCGC TGATCGAGGC CTGCCGCTAC ATGGAGGCGC AGTCCTCCCG CATTCCGGGC
TTCGGCAGGG GGCTGTACGA GTTTCTCAAG CCGCTGTTTT CGTCGGAAAA AGCCAGCGGG
CGGCGGCTGA TCAAGGCGGC CTGCCTGCTG CATGACATCA GCTGGCGCGC GCATCCGGAC
TACCGGGCGG AGGTGTGCTT CGACACCGCC ACGCGGGCCA ATCTCGGCGG GCTGTCCCAT
TCGGAGCGGA TCTTCCTCGG GCTTGCGCTG CTGCACCGCT ACAAGAACAG CCGCTCCGGC
AGCCGGTTCG AGCATTTCTT CGAACTGCTA CCGGAAAAGG ACCAGAAGAA GGCCGAGGTG
CTGGGCAAGG CCATGCGGTT CGGCGCGATG CTGGCCGCGC AGGATCCCAG CAAGATGGGC
CGGCTGAAGC TTTACCCGAA AAAGAAGGTG CTGGAGCTGC GCATGCCGGT GGAGACCCGC
GATCTGTTCG GGGAGGTCGC CCAGGCCCGG TTCAAGTCCC TCGCCGCCGC GCTCGAAGCC
GAAGCGCGCG TGCTGATCTG A
|
|---|
| Protein sequence | MQDEDWGPFG KALFEDPSAQ ALGRVGVIDV GSNSVRMVVF DGAARSPAYF YNEKVMAGLG
AGLSQSGRLN PEGRIRAMDA MKRFVLLAQS MNVSPLVAVA TAAMREAEDG PAFREELTQE
TGLRLWVIDG AEEARLSAQG VLLGWPGATG LVCDIGGSSL ELAELSEGQV GKRETSALGP
LKLRDVPGGK KGLKAHIRSE LDTLRARIDG SYDRLFLVGG SWRAIARLDM IRREYPLAVL
HEYRMSPRAV SETIAMIQNN TPEALRAMSG IGEARMSLLP EAAQVLGPLI RTFRPKEIAV
SAYGIREGLL YEQMPQKLRN RDPLIEACRY MEAQSSRIPG FGRGLYEFLK PLFSSEKASG
RRLIKAACLL HDISWRAHPD YRAEVCFDTA TRANLGGLSH SERIFLGLAL LHRYKNSRSG
SRFEHFFELL PEKDQKKAEV LGKAMRFGAM LAAQDPSKMG RLKLYPKKKV LELRMPVETR
DLFGEVAQAR FKSLAAALEA EARVLI
|
|---|
| |