Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0646 |
Symbol | |
ID | 5711481 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 645472 |
End bp | 647574 |
Gene Length | 2103 bp |
Protein Length | 700 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641266554 |
Product | TRAP-type uncharacterized transport system, fused permease components |
Protein accession | YP_001531993 |
Protein GI | 159043199 |
COG category | [R] General function prediction only |
COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGACC CATCCGATGA CAGCGGCGGC TTGCGCCGAT TTTCCGGCCT GCCGGGCACC CTGATCGCGG TTGCCTCCTT CCTGATCGCG GTCGGCCATA TCTACGTGGC CTTCGATCCC GTCCTGTCGG AGTTGCAGCG CAACGCCTTC CACTTCGCGG GCTTTGCTGC GCTCGCGGCC CTGTTCTATC CCATCGCGCG GGGGCGGCTG GCCCTCGGGG TCGACCTGGT GCTGGGCTTG GTGGTCGCGG CGGCGGCGGT GTATCTCAGC TATGCCGAGG ATGGCATCTA CGACCGGGGC GTGAAGTTCA ACACCGCCGA CTGGATCGCC GCCATCATCG TGGTTCTGGG CGCGATCGAG CTGACCCGGC GGCTGACCGG CTGGATCATC CCGGCCCTGA TCGTGATCGC GCTCAGCTAC GTGGTCTGGT GGGGTAAGTT CGTGGGCGGG GTGTTCAACT TCCCCGGCCT GAAACTGGAA TCGGTGCTGT TCCGCTCGGT CTATGGCGAT GATGCGATGT TCGGCTCCAT CGCCAGCATT TCGTCGACCT ACGTGTTTCT GTTCATCATT TTCGGCGCGT TCCTGCTGCG CTCCGGCGCG GGGGAGTTCG TGATCAACCT GGCGCGCGCC GTGGCCGGGC GCATGGTCGG GGGGCCGGGC ATCGTGGCGG TGATTGCCAG CGGGCTGACG GGCACGATCT CGGGCTCGGC GGTGGCCAAC ACCGCATCGA CCGGCGTGAT CACCATCCCG CTGATGAAGC GCGCGGGCTT CCAGCCGAAA TTCGCAGGCG GGGTCGAGGC CGCGGCCTCC ACCGGCGGGC AGCTGATGCC GCCGATCATG GGGGCCGGGG CCTTCGTGAT GGCGAGCTTC ACCGCCATCC CCTACGAGAC CATCGTGGCG GTCGCGGCCC TGCCTGCGCT GCTTTATTTC CTGTCGGTGG CCTTCTTCGT GCGGATCGAG GCGCGGCGCC AGAACCTGCC GCCCATGGCC GACGAGGGCC AGACCCTGCG CCGTGCCTTC CTGGAGGGCG GCGCGAGCTT CGTGTTGCCC ATCGGACTGC TGATCGGGAT GCTGGTGAGC GGGTTCACCC CCACCTATGC GGCGGTGTTC GGGATCATCG CGGTGGTGGC GTCGAGCTGG CTGACCCGCA CCCGCATGGG CCCGCGCGCG GTGTTCGAGG CGCTGGTCAT GGGCACAAAG GGGATGATCC TGACGGCGGT GCTCCTGTGT TCGGTTGGGT TGGTGGTCAA CGTGATCGCC ACGGCGGGGG TCGGCAACAC CTTCAGCCTG ATGATCGCCG CCTGGTCGGG CGGAAATATC CTTGTCGCGA TTGTACTTAT CGCCTTGGCG AGCCTGGTTC TGGGCATGGG GCTGCCGGTG ACGGCGGCCT ATATCGTGCT GGCGACGCTC TCGGCCCCGG CGCTGGCGGG CATGATCGCC GACCAGGTGG TGATCGCGCA GATCGCCGCC GGGACCTTGC CGCCCACGGC GCAGGCGATC TTCATGCTGG GCGCGCCCGA CCAGATGGCG CTGCTCGCAG CCCCGATGTC CGAGGCCGAT GCAACCGCGC TGGTCCGCGG CCTGCCCCTG GAAGTGGCCG CGCCCCTGCG CGACCTGGTG GTGCCGCCCG AGGCCGCGGT CGCGGCCCTT CTGTCGGCGC ATATGATCGT CTTCTGGCTC AGCCAGGACA GCAACGTCAC CCCGCCCGTG GCCCTTGCGG CCTTCACCGC GGCGGCGATT GCCAAGGCGC CGGCGATGGC GACGGGGGTG GCGAGCTGGA AGCTGGCCAA GGGTCTCTAC ATCGTGCCGG TGCTCTTTGC CTACACGCCG CTTCTGTCGG GCGACTGGGG TGCTATGGTG CAGGTCTTTG CCTTCGCGGT GGTCGGCATC TACGCGCTGG CGGCGGGGAT TCAAGGCTGC ATGGAGCGGC CCCTGGGCCT TTTTCCGCGA GTTCTGAGCG GGCTGGCGGG GCTGGCCTGC CTGTGGCCGG GTCTGATCTG GGCCAATGTC GCGGGCGTGG TCTGCTTGGC GCTGCTGCTG GCGTGGAACC TGCGCGACGG GGTGCCGGTG GCCGGGGCGC CGAGGGCCGA GACCGACGCG TGA
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Protein sequence | MPDPSDDSGG LRRFSGLPGT LIAVASFLIA VGHIYVAFDP VLSELQRNAF HFAGFAALAA LFYPIARGRL ALGVDLVLGL VVAAAAVYLS YAEDGIYDRG VKFNTADWIA AIIVVLGAIE LTRRLTGWII PALIVIALSY VVWWGKFVGG VFNFPGLKLE SVLFRSVYGD DAMFGSIASI SSTYVFLFII FGAFLLRSGA GEFVINLARA VAGRMVGGPG IVAVIASGLT GTISGSAVAN TASTGVITIP LMKRAGFQPK FAGGVEAAAS TGGQLMPPIM GAGAFVMASF TAIPYETIVA VAALPALLYF LSVAFFVRIE ARRQNLPPMA DEGQTLRRAF LEGGASFVLP IGLLIGMLVS GFTPTYAAVF GIIAVVASSW LTRTRMGPRA VFEALVMGTK GMILTAVLLC SVGLVVNVIA TAGVGNTFSL MIAAWSGGNI LVAIVLIALA SLVLGMGLPV TAAYIVLATL SAPALAGMIA DQVVIAQIAA GTLPPTAQAI FMLGAPDQMA LLAAPMSEAD ATALVRGLPL EVAAPLRDLV VPPEAAVAAL LSAHMIVFWL SQDSNVTPPV ALAAFTAAAI AKAPAMATGV ASWKLAKGLY IVPVLFAYTP LLSGDWGAMV QVFAFAVVGI YALAAGIQGC MERPLGLFPR VLSGLAGLAC LWPGLIWANV AGVVCLALLL AWNLRDGVPV AGAPRAETDA
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