Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0552 |
Symbol | |
ID | 5712005 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 539277 |
End bp | 539843 |
Gene Length | 567 bp |
Protein Length | 188 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641266454 |
Product | sugar isomerase |
Protein accession | YP_001531899 |
Protein GI | 159043105 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0794] Predicted sugar phosphate isomerase involved in capsule formation |
TIGRFAM ID | [TIGR03127] 6-phospho 3-hexuloisomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCTTGG CTCTCGACGG GCTTGCAGAT CGATTGCTGG ACGAGCTTCG TCCCGGTCTT TCGGCCGAGG TGCTGGCGCA GGTCGCGACA TTGTCGCAGG CGTTGGCAGG TGCGAAGCGC ATCTTGTGTT ACGGCGTCGG TCGTGAAGGC CTGATGATGA AGGCGCTTGC CATGCGGCTT TATCACCTGG GCTGCGACGC ACATGTCGTT GGCGACATGA CGGCGCCTCC GGTGGGACAG GGCGATCTGT TGTTCGTCAG CGCCGGTCCC GGCCAGTTTG CGACCGTCGC AGCGCTGGTC GAGGTCGCCA GATTGAGCGG AGCCGCTACC ATTTGCATCA CCGCGGAACC AGGCGGTGCG GTACCGCGAA GTGTCGATGC TTGTGTGACC TTGCCGGCTC AGACGATGGC TGCAGATCAG GGAGACAAGA CCACCTCGAT CCTGCCCATG GGCTCGCTCT ACGAGGTATA CATGTTTCTG TTCTTCGAAA TCCTCGTGCT CGATTTGCGT GCCCTTATGG AGGTCGCGCC TGAGGCCATG CGCGCCAATC ACACAAACCT GGAATAG
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Protein sequence | MTLALDGLAD RLLDELRPGL SAEVLAQVAT LSQALAGAKR ILCYGVGREG LMMKALAMRL YHLGCDAHVV GDMTAPPVGQ GDLLFVSAGP GQFATVAALV EVARLSGAAT ICITAEPGGA VPRSVDACVT LPAQTMAADQ GDKTTSILPM GSLYEVYMFL FFEILVLDLR ALMEVAPEAM RANHTNLE
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