| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0250 |
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| Symbol | |
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| ID | 5712176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 246745 |
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| End bp | 249237 |
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| Gene Length | 2493 bp |
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| Protein Length | 830 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641266146 |
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| Product | efflux transporter |
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| Protein accession | YP_001531600 |
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| Protein GI | 159042806 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCACCC TGCCCTTCCG CAACCCGCGC CTCGTCGCCC TCGCCCTCTT GGTCATCATC
GCCGCGGGGC TCTCGGCCTT CCTGTCGCTC GGACGGCAGG AAGACCCGAC CATCACCAAC
CTCAACGCCA CCATCACGAC CCTCTATCCG GGCGCGGAGC CGAGCCGGAT AGAGGCGCTG
ATCTCCCAAC CCCTCGAAGA CGAGATGCGC ACACTGGCGG ATATGGACGA GATCAAATCG
ACCTCCGCCA CGGGCATCTC GATCATCTCC CTGCAACTCG ACGAGGCCAC CGACCCCGCC
ATCATAGAAG AGATCTGGTC CAAGGCCCGC GACGGCGTTG CGGACGTGGC CCGCACCTTC
CCCGAAGGCG TCCAACCCCC GGAATTCGAC AGCGAGGGCA TCGCCGCCGT CGGCGCCATT
TTCGCCGTCA AACCCAGCGG CGCGGCCGCC AACCCCGCCG TGCTCGCCCG CACTGCCGAG
GAACTGGCCG AACGCCTGCG CAACGTCCCC GGCACCAAGA GCGTCGAGAG CTGGGGCACC
CCCACCGAAG AGGTCCGCGT CACCCTCGAC CCCGCCGCCA CCGCAGCGCT CGGGCTGACA
CCGGATGCGG TCTCGGCGGC CGTGCGCGCC GCGGACGCCA AGGTCCAGTC CGGCCGCCTG
GTCAGCGGCA GTAGCGACAT CCTGCTCGAT GTGCAGGGCG ATATCGAAGC CCTCGACCGC
CTGCGCCAGA TCGTGCTCGC CACCGGCCCG CAGGGCCAGG TCACGCGCCT CGGCGACGTG
GCCGAGATCA GTCGCAGCCC CCGCGACCCC GCCCCCGCCA TCGCCCTTGT GGACGGACAG
GACGCGATCC TGCTGGGCGT GCAGGCCAAC GAGGGGCTGC AGATCGACGT CTGGATGGGC
TGGATCCGGG ACGAGGTGGC CGCCTTCGCG CCCCTCCTGC CCGCCTCCCT GACGGTGGAG
CAGATCTTCG ACCAGGCGGT CTATACCGCC GACCGGCTGA GCGAGGTGGC CCTGAACATG
GCCATCGGCG TCGGGCTGGT GGTGCTGGTC CTGCTGGTGA CCCTCGGCGT GCGCGCGGCC
CTGATCGTGG CCGCCGTCCT GCCGCTGGTC AGCCTCGCGA CCCTTGCCTC GATGAACTTC
ATCGGCCTGC CGATCCACCA GATGAGCGTC ACGGGGCTGA TCGTGGCGCT CGGGCTGCTG
GTGGATGCGG CGATCGTGAT GACCGACGAC ATCCGGCAAC GCCTGCGCGC GGGCGCCTCC
CGGATGGACG CGGTGGATAC GGCTGTCAAA CGCCTCTTCG CGCCCCTGCT GGCCTCCACC
GTCACCACCG CGCTCAGCTT CGTGCCGATG ATCCTGCTGC CCGGCGGCGC GGGGGATTTC
GTGGGGGCGA TCGCCATCGC CGTGGTGTTG ATGCTGATCT GGTCGCTGAT CATCGCCCTG
ACCATCACGC CGGCGCTCGC GGGCTGGTTG CTGCCCGAGG GCGGGCGCGG CGCGGGCCTG
CCCTCGGGTC TGGCGGGCCG GGCCTTTCAC GCATCGCTGC GCTGGTCGGT GCGCAACCCG
GTCCGGTCCG TCGCGCTGGC CCTCGTGCTG CCGGCGATGG GCTTTGCCAG CTTTCCCACC
CTGACCGCGC AATTCTTTCC GGGCGTGGAC CGCGACCAAT TCCATATCGA GGTGGACCTT
GCCCCCGGTG CCGCGCTCAG CCGCACCCAC GCCCTGGTCG AAGAGATGGA CGCGCTCCTG
CGCGCCACCC CCGGCATCAC CCGCGTCGCC TGGACCCTGG GCGAGAGCGC GCCGGCCTTC
TACTACAACA TCGTCGGCTC CCGGCAGGGC GCGCCGGGCT TTGCCCAGGA GCTGATCACC
ACCGCCGCGC CCGAGGCCAC CGCCGACCTG CTCGACCCGC TGCAGACCAC CCTGACCGCC
CGCTTCCCCG AGGCCCGCAT CCTCGTGCGC GGACTGGTGC AGGGCCCGCC CGTGGACGCG
CCCGTGGAAT TCCGGCTGGA GGGTCCCACG CTCGAGGTGC TGCGCGCCGA AGGCGAGCGG
CTGCGTGCCA TCCTGCTGGG CGTCGAGGGG ATCACCACCG TGCGCGCCAG CTACGAGGGC
GGCGCGCCCA AGGTGCAGGT CGAGATCGAC GAGGCCGCGG CGCAACTGGC CGGGCTGAGC
CTCGCGGACG TGGCCCGGCA ATTGCAATCC GGCCTCGACG GGGTGACCGG CGGGTCGCTC
ATCGAGGCCT CCGAACAGCT CCCCGTCCGG GTGCAGCTGG GGGCGGGAAC GCGGGACGAT
CTGGAGCGTA TCTCCCAGAT GCTCATCGTG CCACCACCGG GGAACGGCCG TTCTAGCCAG
ACCCTGCCCG CGTTCCCCCT CTCCGCCATG GCCGAGATTT CGCTGGTCCC GTCCGACAGC
CCCATCGCGC GGCAGAACGG CACACGGGTC AACACCGTGC AGGCCTTCAT CGCGCCCGAT
CTGCTGCCGC AGGAGGCACT GGTGCGCGCA TAA
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| Protein sequence | MRTLPFRNPR LVALALLVII AAGLSAFLSL GRQEDPTITN LNATITTLYP GAEPSRIEAL
ISQPLEDEMR TLADMDEIKS TSATGISIIS LQLDEATDPA IIEEIWSKAR DGVADVARTF
PEGVQPPEFD SEGIAAVGAI FAVKPSGAAA NPAVLARTAE ELAERLRNVP GTKSVESWGT
PTEEVRVTLD PAATAALGLT PDAVSAAVRA ADAKVQSGRL VSGSSDILLD VQGDIEALDR
LRQIVLATGP QGQVTRLGDV AEISRSPRDP APAIALVDGQ DAILLGVQAN EGLQIDVWMG
WIRDEVAAFA PLLPASLTVE QIFDQAVYTA DRLSEVALNM AIGVGLVVLV LLVTLGVRAA
LIVAAVLPLV SLATLASMNF IGLPIHQMSV TGLIVALGLL VDAAIVMTDD IRQRLRAGAS
RMDAVDTAVK RLFAPLLAST VTTALSFVPM ILLPGGAGDF VGAIAIAVVL MLIWSLIIAL
TITPALAGWL LPEGGRGAGL PSGLAGRAFH ASLRWSVRNP VRSVALALVL PAMGFASFPT
LTAQFFPGVD RDQFHIEVDL APGAALSRTH ALVEEMDALL RATPGITRVA WTLGESAPAF
YYNIVGSRQG APGFAQELIT TAAPEATADL LDPLQTTLTA RFPEARILVR GLVQGPPVDA
PVEFRLEGPT LEVLRAEGER LRAILLGVEG ITTVRASYEG GAPKVQVEID EAAAQLAGLS
LADVARQLQS GLDGVTGGSL IEASEQLPVR VQLGAGTRDD LERISQMLIV PPPGNGRSSQ
TLPAFPLSAM AEISLVPSDS PIARQNGTRV NTVQAFIAPD LLPQEALVRA
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