| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1087 |
|---|
| Symbol | |
|---|
| ID | 8418912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1277232 |
|---|
| End bp | 1278980 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 645037659 |
|---|
| Product | DNA mismatch repair protein MutL |
|---|
| Protein accession | YP_003197953 |
|---|
| Protein GI | 258405211 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0323] DNA mismatch repair enzyme (predicted ATPase) |
|---|
| TIGRFAM ID | [TIGR00585] DNA mismatch repair protein MutL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0917186 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0241297 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGCGC CTATTCGGGT CCTTCCCCCG GTATTGCAGA ACCAGATCGC CGCTGGAGAG
GTCGTCGAAC GCCCGGCCAA TGTCGCCAAG GAATTGATCG AAAACAGTCT GGATGCCGGT
GCGACGCGGA TCGAAATCAA TCTGGAAAAC GGCGGTCAGG GATTGATCCA GGTCCAGGAC
AACGGGCACG GCTTGGCGGC CGAGGACATT CCCCTGGCCC TAACCCGGCA CGCCACGAGC
AAAATCCAGG GCATCGAGGA TCTCGTGCGT ATCGCTAGCC TCGGTTTCCG GGGCGAAGCC
CTGCCGAGTA TCGCCTCCGT CTCCCGGCTC TCTTTCGCTT CTGCCCCTGC CGGCGTCGAA
GCCGGACACG AGGTCGAAGT CGCTTTTGGC GAAATGGCCT CGGAAGGGCC GGTGGCCTTG
CAGACTGGGA CCCGCATCCA GGTCCGCGAC CTGTTCTCCA ACACCCCGGC CCGGCTCAAA
TTTCTCAAAA CCCAGGCCAC AGAAACCCGG CGCTGCCAGG AAACAGTGTT TAAAATCGCC
CTGGCCCACC TGGATAAGGA GTTCACGCTC AGCATCCAGG GACGCAACCA GCTCCATCTG
GTTAAACATC AGGCATTGCC GCAACGGCTG GCTGCAGTGT GGCCGCAACA GGTTATCGAC
GGGCTGCTCC CGCTCCAGGG AGAACGTCAC GGGCTCCAGG TGGAAGGGGT TATCGGATCC
CCACGGACCG CCCAGGGCCG GGCGCAACGG ATCCATTTTT TCATCAACGG CCGCCCGGTC
CAGGACAAGA TCCTGCTCAA AGCCCTGCGC GAGGGATACA AGGGGGCGCT GCTGAGCAAG
GAGTACCCCC AGGCCGTGCT GTTTTTGACC CTGCCGCTGG AAGAGGTGGA CATCAATGTC
CATCCTGCCA AATCCGAGGT CCGCTTCCGC GATGAGCGCA GTGTGGCTGG TCTGGTGTGC
ACAACGGTTC GCAATGCACT TGAAAAATGT GACCCCAGTC AGGCTGTACT CGGGGAAGCC
CCTGCCACAC AGTCTTCGGT CCAGGCCCCA CAAGCGGCGG CTCCGAAATT CGGAACCTTC
CATGAGTACC TGGAAAGCGC GGACGCACCA TCGCCGCAGA CACGAGCGCG GTACACCTCT
TCGTCCCCAA ATACACCACA GACCGAGACA GCACCGCAGA TTCGCGAATC GGGCCCGGCC
TCCCGGGAAC CGGCCTACCT TGGCCAGGTC GCCTCGACAT ATCTCTTGGT CGACGACGGG
CAGGGATTGC TCCTGGTCGA TCAGCACGCG GCCCACGAGC GCATCCTGTT CAACGCCCTG
CGCCAGCAGC ATGACGGTGT CGAGCAACAG CTCCTGGCCC TGCCGCTGGA GCTGGCCCTG
CAGCCTGGTG AAAGGGAACG GTTTCAGGAC GTGGCGTTGC AATTGCGCCA GATGGGATTC
TCCTGTTCCC TGGTCGAATC CTCCCTGCTT TCGGTACAGG CCATCCCCGC CAGTCTGGCC
ACGGATCAGG CCCGGGCGTT GCTTCGCGAC ATCTTGGGAG GCAAAGAACG CTCCGTGGAT
GACATGCGGG TCGTCCTTGC CTGCCGCATC GCCATCAAGG CAGGGGACCC ACTGAGCCGG
GACGAGGCAC TGCACCTCTT ACAGGCCTGG GAACAGAGTC AGGAGCGATT TTATTGCCCC
CACGGTCGCC CGGTGGCCGT CCGCTTCGGG CCGGGTGACC TGGAGCGACT TTTCAAACGG
GGACAATAG
|
|---|
| Protein sequence | MSAPIRVLPP VLQNQIAAGE VVERPANVAK ELIENSLDAG ATRIEINLEN GGQGLIQVQD
NGHGLAAEDI PLALTRHATS KIQGIEDLVR IASLGFRGEA LPSIASVSRL SFASAPAGVE
AGHEVEVAFG EMASEGPVAL QTGTRIQVRD LFSNTPARLK FLKTQATETR RCQETVFKIA
LAHLDKEFTL SIQGRNQLHL VKHQALPQRL AAVWPQQVID GLLPLQGERH GLQVEGVIGS
PRTAQGRAQR IHFFINGRPV QDKILLKALR EGYKGALLSK EYPQAVLFLT LPLEEVDINV
HPAKSEVRFR DERSVAGLVC TTVRNALEKC DPSQAVLGEA PATQSSVQAP QAAAPKFGTF
HEYLESADAP SPQTRARYTS SSPNTPQTET APQIRESGPA SREPAYLGQV ASTYLLVDDG
QGLLLVDQHA AHERILFNAL RQQHDGVEQQ LLALPLELAL QPGERERFQD VALQLRQMGF
SCSLVESSLL SVQAIPASLA TDQARALLRD ILGGKERSVD DMRVVLACRI AIKAGDPLSR
DEALHLLQAW EQSQERFYCP HGRPVAVRFG PGDLERLFKR GQ
|
|---|
| |