| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_1964 |
|---|
| Symbol | |
|---|
| ID | 7258933 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | + |
|---|
| Start bp | 2116474 |
|---|
| End bp | 2117580 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 643561860 |
|---|
| Product | membrane protein AbrB duplication |
|---|
| Protein accession | YP_002458440 |
|---|
| Protein GI | 219668005 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3180] Putative ammonia monooxygenase |
|---|
| TIGRFAM ID | [TIGR03082] membrane protein AbrB duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTTTT TATTGGATTT AGGCTTGATG ATTGGCCTGG CAGTTGCAGG CTATGGATTG
TTTAGGAAGA TTAATTTTCC GGCGCCTTCC ATTATGGGAC CGATGATGAT CTTAGGAATA
TATCAGGTTT TAGGAGGAGG ACTCCCTGAA CTCTCCCTGA CCATCGTTAA TATCCTGCAG
ATCGTGATCG GTCTGTCTTT AGGGGCCAGA ATCAATGATC AGAAGCTGGC CGATCTGGGT
AAAGTGTTGC GGCCGTCTCT CGTTATCGCA GTTTGGACTT TGTTGTCAAC CTTTGGCATG
ACCTTTATTA TTCATCAATT CACACCCAAT ATGGCCACGG CTCTTTTTGC GGCTGCCCCC
GGCGGAATCT CGGAAATGAC AGTGCTGGCC TTAGTTTACG ACGCCGCGGT GCCCATTGTG
TCCACTTATC AATTTGTACG TTTAGTGGTC ATTATCAGTG TGGTGCCTTT AATCGCCCGT
TGGCTGCAGG GAAGACAGAA AAGCAAAGAC CTCGCGGTTG ATCAAGAGCC TGCCGGAGCT
GTTCTGGGGG GAGCGGACTT GGAAGATTCC CAGGGGCCGG AGTCAAAAAC TGCTCAGGAG
CAGCCGGTAT CCGCGTTAAC CACCTGGCAA ATCCTTCCCC TTTACCTGAT AGGCACTTTG
GGAGGATTGC TTCTGCTGGC TTTGAACTTT CCCGGGGGTG GAGTCATCGG AGCTATGGCT
GCCTTGGCCA TAACCAATGT ACTGTTTAAA AAGCAGTATA AATTCCCCAA TAGTGTGATG
CAAATCGCCT TGCTGGGAAT TGGAATGAGT ATCGGGTTGG AGTTTTCGCC GGAGATAGTC
CGGACGATTC GGGAGATGCT CCTGCCGATT GTCGGGTTCT CTCTCCTGAT TGTGCTCAGC
AATCTTGCTG TGGGCTGGTA TATCCGTCAC CTGACCCATT GGGATATGAT CACCTGTCTG
TTGAGTTCGG CGCCCGGCGG CCTGAATCAA ATGCTTGTGG TTGCCGAAGA GATGAAGGCC
GATTCTCTGA CCATCAGTAT ACTGCAATTG GTGCGCCTGC TGATTATCAT CATCTGCATC
CCGTTGCTGG CCCCTTTTTT CGTCTGA
|
|---|
| Protein sequence | MLFLLDLGLM IGLAVAGYGL FRKINFPAPS IMGPMMILGI YQVLGGGLPE LSLTIVNILQ
IVIGLSLGAR INDQKLADLG KVLRPSLVIA VWTLLSTFGM TFIIHQFTPN MATALFAAAP
GGISEMTVLA LVYDAAVPIV STYQFVRLVV IISVVPLIAR WLQGRQKSKD LAVDQEPAGA
VLGGADLEDS QGPESKTAQE QPVSALTTWQ ILPLYLIGTL GGLLLLALNF PGGGVIGAMA
ALAITNVLFK KQYKFPNSVM QIALLGIGMS IGLEFSPEIV RTIREMLLPI VGFSLLIVLS
NLAVGWYIRH LTHWDMITCL LSSAPGGLNQ MLVVAEEMKA DSLTISILQL VRLLIIIICI
PLLAPFFV
|
|---|
| |