| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4808 |
|---|
| Symbol | |
|---|
| ID | 8228414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 5812504 |
|---|
| End bp | 5814780 |
|---|
| Gene Length | 2277 bp |
|---|
| Protein Length | 758 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644932657 |
|---|
| Product | alpha-1,2-mannosidase |
|---|
| Protein accession | YP_003089174 |
|---|
| Protein GI | 255038553 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3537] Putative alpha-1,2-mannosidase |
|---|
| TIGRFAM ID | [TIGR01180] alpha-1,2-mannosidase, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.216188 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC TCCTGACCTG CCTTTTTACC ATTATTGCCG CCATGCAATT ATCCTACGGG
CAAGGTACCG CAAATCTGGT CGATTACGTG AACCCGCTGA TGGGCACCCA GTCCAAATTC
AGCTTATCTG CCGGTAACAC TTATCCGGCC ATCGCCCTGC CCTGGGGAAT GAACTTCTGG
ATGCCGCAAA CCGGCAAAAT GGGCGACGGA TGGGCTTATA TGTACGACGC CGAAAAGATC
CGTGGCTTCA AGCAAACGCA CCAGCCGAGC CCGTGGATCA ACGATTACGG CCAGTTTGCC
ATTATGCCCG TCACCGGCAA GCTGAAAATC GACGAGGAAA GCCGCGCGAG CTGGTTCTCC
CACAAGGCCG AAACAGCAAA ACCGCATTAT TACAAGGTAT ACCTGGCCGA CCACGACATT
ACCACCGAAA TCACACCAAC CGAGCGCGCC GCTCAGTTCC GCATTACTTT CCCGCAGGCG
GACACTTCCT ACGTGCTTGT GGACGCATTT GACAAAGGTT CGTATGTGAA AGTTCTGCCG
AAAGAGCGTA AAATCATCGG TTACACCACG AAAAACAGTG GCGGTGTGCC GGCCAATTTC
AAGAATTATT TTGTTTTGGT TTTTGATAAA CCCTTCACAT TCTCGTCTGC ATTCCACGGA
AAGACGCTCG CCAAAGACAC GCTCGAACTG AGCGCAGCGC ATGCAGGTGC AGTGGTTGGG
TTTAAAACCA AAAGAGGCGA GCAGGTCGGT ATCAAGGTAG CCTCTTCGTT CATCAGCCCC
GAACAAGCCG AGCTGAACCT GCAACGCGAG CTGGGCAACG ACTCGTTCGA TGCAACGATG
AAAAAAGGCG AACAGGCCTG GAACACGGAG CTTTCGCGCA TTAAAGTAGA AGGCGACAAC
ATCGACCAGA TCCGCACATT TTACTCGTGC CTTTACCGCG TGCTGTTATT CCCGAGGAAG
TTTTTTGAAA TGGACAAGGC CAACAAGGTC GTGCATTACA GCCCTTACAA TGGCGAGGTG
CGCCCCGGCT ACATGTTTAC CGACAATGGC TTCTGGGATA CATTCCGCGC CGTGTTCCCG
TTCTTCACGC TCATGTACCC GACCCTGAAC GGGCAGATCA TGGAAGGCCT CGCCAATGCA
TACGACGAAA GCGGCTTCCT CCCCGAATGG GCCAGCCCCG GCCACCGCGA TTGTATGATC
GGCTCGAACT CGGCCTCGCT GATCGCCGAT TCGTACATTA AAGGCATCCG CGGTTATGAC
ATTAACAAAC TGTACGAAGC CATACTGAAA AACACCGAGA ATGCAGGCCC AGTAAGCTCG
GTAGGGCGTT TCGGGCATGA ATATTATAAT GAGCTGGGTT ATGTTCCTTA TGATGTAAAA
ATCAATGAGA ATGCCGCGCG GACGCTGGAA TATGCCTATG CCGATTTCTG TATTGCCCAA
CTGGCGAAAG AGCTGAAAAA GCCGCAATCG GAAGTGGATT TGTATTTGAA AAGAAGCCAA
AACTACAAAA ACCTCTTCGA CCCGGAAACG AAATGGATGC GCGGCAAAAA CAAGGACGGC
AAGTTCCAGA CGCCATTTAA TCCTTTCAAA TGGGGCGATG CATTTACCGA GGGGAACAGC
ATTCACTACA CCTGGTCGGT GTTCCAGGAT GTGAAAGGGC TGATCAACCT CGTAGGCGGC
CGTGAGGCTT TTGTAAAAAA ACTCGATACG GTGTTTACAT TGCCGCCGGT ATTCGACGAC
AGCTATTACG GCTTCCCGAT CCACGAAATC CGCGAAATGC AGATCATGAA CATGGGTAAC
TATGCGCACG GCAACCAGCC GATCCAGCAT ATGATTTACC TGTACAACTA CGCCGGCGCC
CCCGACAAAG CCCAATACTG GACGCGCCAG GTTATGAAAA GGCTGTATCA GCCCACACCC
GACGGCTATT GCGGCGACGA GGACAACGGT CAGACCTCGG CCTGGTACGT GTTTTCATCC
CTCGGCTTCT ACCCCGTCAC ACCCGGCACC ACGCAGTATG TGATCGGCTC GCCATTATTC
AAAAAAGCGA CGCTCACGAT GGAAGACGGC AAGAAATTCA CCATCGAAGC GCCGGCGAGC
AGCGATACCA ATTTGTACAT TAAAGGCGCT AAACTGAACG GCAAGTCGTA CGACAAAACT
TACCTCGAAC ACAGCGACAT CCAGAAAGGC GGAACCGTAC AATTCGACCT CACCGACAAG
GCTTCCAACA ACTGGGGAAC CAAGCCGGAA GCGGCGCCGT TCTCGCTGAC CAAATAA
|
|---|
| Protein sequence | MKKLLTCLFT IIAAMQLSYG QGTANLVDYV NPLMGTQSKF SLSAGNTYPA IALPWGMNFW
MPQTGKMGDG WAYMYDAEKI RGFKQTHQPS PWINDYGQFA IMPVTGKLKI DEESRASWFS
HKAETAKPHY YKVYLADHDI TTEITPTERA AQFRITFPQA DTSYVLVDAF DKGSYVKVLP
KERKIIGYTT KNSGGVPANF KNYFVLVFDK PFTFSSAFHG KTLAKDTLEL SAAHAGAVVG
FKTKRGEQVG IKVASSFISP EQAELNLQRE LGNDSFDATM KKGEQAWNTE LSRIKVEGDN
IDQIRTFYSC LYRVLLFPRK FFEMDKANKV VHYSPYNGEV RPGYMFTDNG FWDTFRAVFP
FFTLMYPTLN GQIMEGLANA YDESGFLPEW ASPGHRDCMI GSNSASLIAD SYIKGIRGYD
INKLYEAILK NTENAGPVSS VGRFGHEYYN ELGYVPYDVK INENAARTLE YAYADFCIAQ
LAKELKKPQS EVDLYLKRSQ NYKNLFDPET KWMRGKNKDG KFQTPFNPFK WGDAFTEGNS
IHYTWSVFQD VKGLINLVGG REAFVKKLDT VFTLPPVFDD SYYGFPIHEI REMQIMNMGN
YAHGNQPIQH MIYLYNYAGA PDKAQYWTRQ VMKRLYQPTP DGYCGDEDNG QTSAWYVFSS
LGFYPVTPGT TQYVIGSPLF KKATLTMEDG KKFTIEAPAS SDTNLYIKGA KLNGKSYDKT
YLEHSDIQKG GTVQFDLTDK ASNNWGTKPE AAPFSLTK
|
|---|
| |